View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_low_9 (Length: 381)
Name: NF6647_low_9
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 2625692 - 2625331
Alignment:
| Q |
11 |
atgaatagaaaactcacatttaaagaaaatgtgcttagatgtttcaatgttagagttacagagattgcacattgaagacaaataacaacctcttacagat |
110 |
Q |
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| T |
2625692 |
atgaatagaaaactcacatttaaagaaaatgtgcttagatgtttcaatgttagagttacagagattgcacattgaagacaaataacaaccttttgtagat |
2625593 |
T |
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| Q |
111 |
aagttgtcatcagtaggtaacttattatgcaagcttctccaaatcaataaagattttgaaggtggaataacacaatgccaaatagctttgacccatgaaa |
210 |
Q |
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| T |
2625592 |
aacttgtcatcagtaggtaacttattattcaagcttctccaaatcaataaaggttttgaaggtggaataacaatatgccagatagctttgacccatgaaa |
2625493 |
T |
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| Q |
211 |
tatgctgaccaataggacactgatgaagataagcttccttaaaag----atagctccctattctaagaatgcatccagatcatcttgtcatctttttcaa |
306 |
Q |
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| T |
2625492 |
tatgctgaccaataggacactgatgaagataaacttccttaaaagatatatagctccccattctaagaatgcatccagatcatcttgtcatctttttcag |
2625393 |
T |
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| Q |
307 |
taacagggatggtgaccttatcaatgaaaccttacagattagggaaagtttgagatagagtt |
368 |
Q |
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| T |
2625392 |
taacagggatggtgaccttatcaatgaaaccttacagattagggaaagtttgagatagagtt |
2625331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 22163027 - 22163087
Alignment:
| Q |
115 |
tgtcatcagtaggtaacttattatgcaagcttctccaaatcaataaagattttgaaggtgg |
175 |
Q |
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| T |
22163027 |
tgtcatcagttgggagcttattatgcaagcttctccaaatcatcatagattttgatggtgg |
22163087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 8499314 - 8499253
Alignment:
| Q |
117 |
tcatcagtaggtaacttattatgcaagcttctccaaatcaataaagattttgaaggtggaat |
178 |
Q |
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||||| || ||||||||||| |||| | |||||||||||||||||| || ||||||||||| |
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| T |
8499314 |
tcatctgttggtaacttattgtgcatgagtctccaaatcaataaagacttagaaggtggaat |
8499253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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