View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6648_high_5 (Length: 206)
Name: NF6648_high_5
Description: NF6648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6648_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 12599773 - 12599867
Alignment:
| Q |
97 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtctctg |
191 |
Q |
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| T |
12599773 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctg |
12599867 |
T |
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Target: chr5; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 12598588 - 12598673
Alignment:
| Q |
17 |
agaaagaagatagaatgtagaaaaactgaaaatggcactgatataagtatcaaaaatacttcatttcacttctatatcacaagtct |
102 |
Q |
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| T |
12598588 |
agaaagaagatagaatgtagaaaaactgaaaatggcactgatataagtataaaaaatacttcatttcacttctatatcacaagtct |
12598673 |
T |
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Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 3374545 - 3374463
Alignment:
| Q |
104 |
agtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagt |
186 |
Q |
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| T |
3374545 |
agtttcttcatctccttgaaagtatcagtactccaaaaaaccctactagttctttgcaccttcaaaaccaatccctctacagt |
3374463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 3325720 - 3325808
Alignment:
| Q |
97 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacag |
185 |
Q |
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| T |
3325720 |
aagtctcagtttcttcatctccttgaaagaatcagtacttaagggaattctaatggttctttgcaccttcaaaaccaatccctctacag |
3325808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 3376486 - 3376441
Alignment:
| Q |
17 |
agaaagaagatagaatgtagaaaaactgaaaatggcactgatataag |
63 |
Q |
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| T |
3376486 |
agaaagaagatagaatgtag-aaaactgaaaaaggaactgatataag |
3376441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 32411804 - 32411893
Alignment:
| Q |
97 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagt |
186 |
Q |
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|||||||||||||||||| |||||||||| || |||||| || ||| || | ||||||||||| ||| || |||||||||| ||||| |
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| T |
32411804 |
aagtcttagtttcttcatttccttgaaagaattagtactgaagcaaactctgtcggttctttgcaacttaaacgccaatccctccacagt |
32411893 |
T |
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