View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6648_low_1 (Length: 330)
Name: NF6648_low_1
Description: NF6648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6648_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 20861635 - 20861823
Alignment:
| Q |
1 |
gagatgaagaggaatccggtgaatgtgattctgaatttgtggaggcaactcagaatcagaatgagacaaattcaaatgatgggattc---aagtgcatag |
97 |
Q |
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| T |
20861635 |
gagatgaagaggaatccggtgaatgtgattctgaatttgtggaggcaactcagaatcagaatgagacaaattcaaatgatgggattcttcaagtgcatag |
20861734 |
T |
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| Q |
98 |
caaaagtccagaacagcaggtgcctacttttgaaagagtaaagaaagatatggaattcttaacaaaatcctgggcaaaaattgccgaga |
186 |
Q |
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| T |
20861735 |
caaaagtccagaacagcaggtgcctactcttgaaagagtaaagaaagatatggaattcttaacaaaatcctaagcaaaaattgccgaga |
20861823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 20861858 - 20861958
Alignment:
| Q |
184 |
agagaaatgatcaacatgtagatgctgaaggctttcaagttcaattctcaaagagtcatatgaagaaggcgcaaaagaaattgaaacaaataagcaagag |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20861858 |
agagaaatgatcaacatgtagatgctgaaggctttcaagttcaattctcaaagagtcatacgaagaaggcgcaaaagaaattgaaacaaataagcaagag |
20861957 |
T |
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| Q |
284 |
a |
284 |
Q |
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| T |
20861958 |
a |
20861958 |
T |
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