View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6648_low_2 (Length: 323)
Name: NF6648_low_2
Description: NF6648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6648_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 1629956 - 1630263
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagtataatttaaata |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1629956 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataatttaaata |
1630055 |
T |
|
| Q |
97 |
ttataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630056 |
ttataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctat |
1630155 |
T |
|
| Q |
197 |
aagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattgtcattatgaacagcaacctc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630156 |
aagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctc |
1630255 |
T |
|
| Q |
297 |
aatgttct |
304 |
Q |
| |
|
|||||||| |
|
|
| T |
1630256 |
aatgttct |
1630263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 1607121 - 1607267
Alignment:
| Q |
158 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
257 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
258 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607221 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttct |
1607267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 1624142 - 1624288
Alignment:
| Q |
158 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
257 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
258 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624242 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttct |
1624288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 160 - 304
Target Start/End: Complemental strand, 10820160 - 10820016
Alignment:
| Q |
160 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcac |
259 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
260 |
caaccagcataatattgtcattatgaacagcaacctcaatgttct |
304 |
Q |
| |
|
| |||| |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttct |
10820016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10820742 - 10820598
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataatttaaatattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
10820742 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataatttaaatattat |
10820647 |
T |
|
| Q |
101 |
aaacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
149 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10820646 |
aaacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1606658 - 1606689
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagag |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1606658 |
ccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 18785179 - 18785314
Alignment:
| Q |
169 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagca |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
269 |
taatattgtcattatgaacagcaacctcaatgttct |
304 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttct |
18785314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University