View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6648_low_3 (Length: 250)
Name: NF6648_low_3
Description: NF6648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6648_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 54401184 - 54401040
Alignment:
| Q |
16 |
atatagaaacgttgccttcatgggttgttgaggatcatgtgtacttgtgccattcctaaacaacaaatattttcaaaccatctccaatgtggacccccac |
115 |
Q |
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| T |
54401184 |
atataaaaacgttgccttcatgggttgttgaggatcatgtgtacttgtgtcattcctaaacagcaaatattttcaaacca-ctccaatgtggacccccac |
54401086 |
T |
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| Q |
116 |
attggtcttctttgataatcactactcattactaactaacatccat |
161 |
Q |
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| T |
54401085 |
attggtcttctttgataatcactactcattactaactaacatccat |
54401040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 54405915 - 54405774
Alignment:
| Q |
16 |
atatagaaacgttgccttcatgggttgttgaggatcatgtgtacttgtgc--cattcctaaacaacaaatattttcaaaccatctccaatgtggaccccc |
113 |
Q |
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| T |
54405915 |
atatagaaacgttgccttcatgggttgttgaggatcatgtgtacttgtgcctcagtcctaaacaacaaatattttcaaactatctaggatgtgga-cccc |
54405817 |
T |
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| Q |
114 |
acattggtcttcttt-gataatcactactcattactaactaac |
155 |
Q |
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| T |
54405816 |
acattggccttctttggataatcactactaactattaactaac |
54405774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 54401040 - 54400984
Alignment:
| Q |
193 |
tccatagcatatggtttcagccgtccagtcggtgttatagtattcatattttgtacta |
250 |
Q |
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| T |
54401040 |
tccatagcatatggtttcagccgtccagtcggtgttat-gtattcatattttgtacta |
54400984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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