View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6649_high_1 (Length: 817)
Name: NF6649_high_1
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 19 - 798
Target Start/End: Complemental strand, 46796182 - 46795406
Alignment:
| Q |
19 |
caaagtacatcattgccctaaac-aaaatctccctttttgtttttctctctttcctcaaacataacaattttatttttcccttcnnnnnnntaaatcaag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
46796182 |
caaagtacatcattgccctaaactaaaatctccctttttgtttttctctctttcctcaaacatcacaaatttatttttcccttcaaaaaa-taaatcaag |
46796084 |
T |
|
| Q |
118 |
tcttaaatggttatgatagtacttactactgtaatgagtatagttattttcaaaaaatgtacttagtatagttagtacgtggtacttagtggttagttag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46796083 |
tcttaaatggttatgatagtacttactactgtactgagtatagttattttcaaaaaatgtacttagtatagttagtacgtggtacttagcggttagttag |
46795984 |
T |
|
| Q |
218 |
tctgatcttttcaaagatagagataggtatctcagataaatgattatatataagtctatgggactgtacttggaccgttaagtataggagcagagaagct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795983 |
tctgatcttttcaaagatagagataggtatctcagataaatgattatatataagtctatgggactgtacttggaccgttaagtataggagcagagaagct |
46795884 |
T |
|
| Q |
318 |
accactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatttcccttcttcatcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795883 |
accactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatttcccttcttcatcat |
46795784 |
T |
|
| Q |
418 |
cttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactcttcttgatgattcact |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795783 |
cttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactcttcttgatgattcact |
46795684 |
T |
|
| Q |
518 |
actttctattcctttcactacatcaacacatcatgatgttgttccattccctgatgctaattttgcagattgtaacaacactgcaatgtttgaacaagat |
617 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795683 |
actttctattcctttc---acatcaacacatcatgatgttgttccattccctgatactaattttgcagattgtaacaacactgcaatgtttgaacaagat |
46795587 |
T |
|
| Q |
618 |
aatggctacaactttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagata |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795586 |
aatggctacaactttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagata |
46795487 |
T |
|
| Q |
718 |
ggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttg |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795486 |
ggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttg |
46795406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 763
Target Start/End: Original strand, 6032037 - 6032092
Alignment:
| Q |
708 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggt |
763 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
6032037 |
aagaaagacaggcatagcaagattcacacatctcaagggttgagagacagaagggt |
6032092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University