View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_high_12 (Length: 376)
Name: NF6649_high_12
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 3712247 - 3712601
Alignment:
| Q |
13 |
aatattgaacttcatttgtctttatattacctttgctgcaagaagggatggtgtaccagtttggaacgttgaccctgcaattgcatatcgaccaccatca |
112 |
Q |
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| T |
3712247 |
aatattgaacttcacttgtctttatattacctttgctgcaagaagggatggtgtaccagtttggaacgttgaccctgcaattgcatatcgaccaccatca |
3712346 |
T |
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| Q |
113 |
cttattatttttattacaataagcataaattattggatgcatcgagccaatgcaaaatttctaaacaatt----tacataaagctacaaaattccttaga |
208 |
Q |
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| T |
3712347 |
cttattatttttattacaataagcataaattattggatgcatcgagccaatgcaaaatttctaaacaattaatttacataaagctacaaaattccttagc |
3712446 |
T |
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| Q |
209 |
aataatttagtaataaaatgacatacaaccaagtgcaccatagattatgtatgagcctcacctgttaacaaaagtcagattttatttgcatagaaaacaa |
308 |
Q |
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| T |
3712447 |
aataatttagtaataaaatgacatacaaccaagtgcaccatagattatgtatgagcctcacctgttaacaaaagtcagattttatttgcatagaaaacaa |
3712546 |
T |
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| Q |
309 |
aggcaagggacaaataatgatgggataaattgcactttaaatagaacgtataata |
363 |
Q |
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| T |
3712547 |
aggcaagggacaaataattatggggtaaattgcactttaaatagtacgtataata |
3712601 |
T |
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