View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6649_high_16 (Length: 315)

Name: NF6649_high_16
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6649_high_16
NF6649_high_16
[»] chr3 (4 HSPs)
chr3 (1-144)||(29199944-29200087)
chr3 (14-144)||(19768432-19768562)
chr3 (210-300)||(29199789-29199879)
chr3 (206-300)||(19768274-19768368)
[»] chr4 (3 HSPs)
chr4 (14-144)||(37616725-37616855)
chr4 (206-300)||(37616919-37617013)
chr4 (1-70)||(25899408-25899478)
[»] chr6 (1 HSPs)
chr6 (206-300)||(22082967-22083061)
[»] chr1 (2 HSPs)
chr1 (206-266)||(51389585-51389645)
chr1 (86-144)||(51389463-51389521)
[»] chr7 (1 HSPs)
chr7 (206-299)||(32663015-32663108)
[»] chr8 (2 HSPs)
chr8 (230-301)||(770395-770466)
chr8 (86-144)||(770534-770592)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 29200087 - 29199944
Alignment:
Q  1 atcaggaccttgtcattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcnnnnnnncccaaatgaggggtttaaattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  29200087 atcaggaccttgtcattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcaaaaaaacccaaatgaggggtttaaattct 29199988  T
Q  101 tgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29199987 tgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga 29199944  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 19768562 - 19768432
Alignment:
Q  14 cattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaat 113  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||    
T  19768562 cattctcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaat 19768463  T
Q  114 ccataaaaatgtcaaacaaagaagtgttaga 144  Q
    |||||||||||||||||||||||||||||||    
T  19768462 ccataaaaatgtcaaacaaagaagtgttaga 19768432  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 29199879 - 29199789
Alignment:
Q  210 cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29199879 cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattaaatgaacaaag 29199789  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 19768368 - 19768274
Alignment:
Q  206 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaag 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||    
T  19768368 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatgaacaaag 19768274  T

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Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 37616725 - 37616855
Alignment:
Q  14 cattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaat 113  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||    
T  37616725 cattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagtatgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaat 37616824  T
Q  114 ccataaaaatgtcaaacaaagaagtgttaga 144  Q
    |||||||||||||||||||||||||||||||    
T  37616825 ccataaaaatgtcaaacaaagaagtgttaga 37616855  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 37616919 - 37617013
Alignment:
Q  206 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaag 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||   |||| |||||||||||||||||||||| ||||    
T  37616919 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacaaattaggcaaagagtaaaattgaatgaaaaaag 37617013  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25899408 - 25899478
Alignment:
Q  1 atcaggaccttgtc-attctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgc 70  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25899408 atcaggaccttgcccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc 25899478  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 22083061 - 22082967
Alignment:
Q  206 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaag 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||    
T  22083061 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatgaacaaag 22082967  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 51389585 - 51389645
Alignment:
Q  206 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaa 266  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51389585 ggtccctatttatacatgagaagtcctaaagaagagggtcatggattcaagcatgcaacaa 51389645  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 51389463 - 51389521
Alignment:
Q  86 aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga 144  Q
    ||||| ||||||||| |||||||||||||||||||||  |||||||||||||| |||||    
T  51389463 aggggcttaaattctcgcaaatgcaaatccataaaaagatcaaacaaagaagttttaga 51389521  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 32663108 - 32663015
Alignment:
Q  206 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaa 299  Q
    |||||||||||||||||||||||||||||| ||||| || ||| ||||| ||||||||||| ||||  | ||||||||||| ||||||||||||    
T  32663108 ggtccctatttatacatgagaagtcctaaacaagagggtaatgaattcacgcatgcaacaatgattgggaaaagagtaaaactgaatgaacaaa 32663015  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 770466 - 770395
Alignment:
Q  230 cctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagt 301  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||  |||||||    
T  770466 cctaaagaagagggtcatggattcaaacatgcaacaacgattaggcaaatagtaaaattgaatagacaaagt 770395  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 770592 - 770534
Alignment:
Q  86 aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga 144  Q
    ||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| |||||    
T  770592 aggggcttaaattctcgcaaatgcaaatccataaaaaggccaaacaaagaagttttaga 770534  T

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