View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_high_18 (Length: 295)
Name: NF6649_high_18
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 1430081 - 1429807
Alignment:
| Q |
1 |
ttacattttattgttctgatctcgacatagtacagtactatctcggtctcatgtgcagtttcgattatatcggttcatcagtgttttaccaatgcattgt |
100 |
Q |
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| T |
1430081 |
ttacattttattgttctgatctcgacatagtacagtactatctcggtctcatgtgcagtttcgattatatcggttcatcagtgttttaccaatgcattgt |
1429982 |
T |
|
| Q |
101 |
tttatatttataccatgtcaaataaaatattacaagctgaataacatcgacatatataacatagttttgtcgagtactagaatttttgtggttttaattg |
200 |
Q |
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| T |
1429981 |
acagtatttataccatgtcaaataaaatattacaagctgaataacatcgacatacataacatagttttgtcgagtactagaatttttgtggttttaattg |
1429882 |
T |
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| Q |
201 |
ctaacatttcttggtaattataatgatttgcagagtggatgatgccattgaaatgttggaatatgtagttggaat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1429881 |
ctaacatttcttggtaattataatgatttgcagagtggatgatgccattgaaatgttggaatatgtagttggaat |
1429807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8064105 - 8063834
Alignment:
| Q |
1 |
ttacattttattgttctgatctcgacatagtacagtactatctcggtctcatgtgcagtttcgattatatcggttcatcagtgttttaccaatgcattgt |
100 |
Q |
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|||| ||||||||||||||||||||||| || | ||||||| ||| |||| |||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
8064105 |
ttactttttattgttctgatctcgacatggtgc-----tatctcgatcttatgtccagtttggattatatcggttcatccatgttttactaatgcattgt |
8064011 |
T |
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| Q |
101 |
tttatatttataccatgtcaaataaaatattacaagctgaataacatcgacatatataacatagttttgtcgag--tactagaatttttgtggttttaat |
198 |
Q |
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| T |
8064010 |
tttatatttataccatgtcatataacatattacaagctgaataacatcgacatatataacatagttttgtcgagtatactagaattatttaggttttaat |
8063911 |
T |
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| Q |
199 |
tgctaacatttcttggtaattataatgatttgcagagtggatgatgccattgaaatgttggaatatgtagttggaat |
275 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8063910 |
tgctaacattttttgttaattataatgatttgcagagtggatgatgccattgaaatgttggaatatgtagttggaat |
8063834 |
T |
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