View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_high_24 (Length: 256)
Name: NF6649_high_24
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 39744297 - 39744172
Alignment:
| Q |
114 |
gaataggagcacattttgttattcaatctaattttggggaattgattctctccggtgaaattctctcaagtttacttaattgttacatctaaatcattaa |
213 |
Q |
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| T |
39744297 |
gaataggagcacattttgttattgaatctaattttggggaattgattctctccgatgaaattctctcaagtttacttaattgttacatctaaatcattaa |
39744198 |
T |
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| Q |
214 |
acatttatatgtatatgtcatatcat |
239 |
Q |
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| T |
39744197 |
acatttatatgtgtctgtcatatcat |
39744172 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 39744394 - 39744329
Alignment:
| Q |
13 |
aatattttgcatatactgtatgtttcattgaaattataattagtgcaaaggtgtgccataaatcat |
78 |
Q |
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| T |
39744394 |
aatatttcgcatatactgtatgtttcattgaaattataattagtgcaaaggtgtgccataaatcat |
39744329 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 17130731 - 17130665
Alignment:
| Q |
151 |
ggaattgattctctccggtgaaattctctcaagtttacttaattgttacatctaaatcattaaacatt |
218 |
Q |
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| T |
17130731 |
ggaattgattctctcaagtgaaattccctcaatttt-cttagtggttacatctaaatcattaaacatt |
17130665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 28811899 - 28811850
Alignment:
| Q |
168 |
gtgaaattctctcaagtttacttaattgttacatctaaatcattaaacat |
217 |
Q |
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| T |
28811899 |
gtgaaattctctcaagttttcttagttgttaaatctaaaccattaaacat |
28811850 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 48902146 - 48902190
Alignment:
| Q |
170 |
gaaattctctcaagtttacttaattgttacatctaaatcattaaa |
214 |
Q |
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| T |
48902146 |
gaaattctctcaatttttcttaattgttacatctacatcattaaa |
48902190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 48903726 - 48903770
Alignment:
| Q |
170 |
gaaattctctcaagtttacttaattgttacatctaaatcattaaa |
214 |
Q |
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||||||||||||| ||| || |||||||||||||| ||||||||| |
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| T |
48903726 |
gaaattctctcaatttttctcaattgttacatctacatcattaaa |
48903770 |
T |
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