View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6649_high_25 (Length: 254)

Name: NF6649_high_25
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6649_high_25
NF6649_high_25
[»] chr2 (1 HSPs)
chr2 (13-254)||(10790683-10790925)
[»] chr1 (2 HSPs)
chr1 (13-254)||(25875163-25875402)
chr1 (13-254)||(4011462-4011714)
[»] chr7 (1 HSPs)
chr7 (13-254)||(35347070-35347322)
[»] chr6 (1 HSPs)
chr6 (13-254)||(2274128-2274380)
[»] chr5 (1 HSPs)
chr5 (13-254)||(39345618-39345870)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 10790925 - 10790683
Alignment:
Q  13 aatatgtaatcgaa-ctcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcatta 111  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10790925 aatatgtaaacgaaactcagggtgaaatatcgaacatacaccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcatta 10790826  T
Q  112 tagttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatgttgcggtaatgatatcaatcactatgcaac 211  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10790825 tatttttgttcttttttaatgatgctaacatttcacagtcatataggatgttgtgttattgcctcctatgttgtggtaatgatatcaatcactatgcaac 10790726  T
Q  212 attgactgatccatgtaacaatcaattcgatgttgcggttgaa 254  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  10790725 attgattgatccatgtaacaatcaatttgatgttgcggttgaa 10790683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 25875163 - 25875402
Alignment:
Q  13 aatatgtaatcgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 112  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  25875163 aatatgtaaacgaactcaaggtgaaatatcgaacatacgccattggttttcatgttaatgatgtg--tgtgtactttctttctctttgatctttcattat 25875260  T
Q  113 agttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatgttgcggtaatgatatcaatcactatgcaaca 212  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  25875261 atttttgttcttttttaatgatgctaacatttcacagtcatataggatgttgtgttattacctcctatgttgaggtaatgatatcaatcactatgcaaca 25875360  T
Q  213 ttgactgatccatgtaacaatcaattcgatgttgcggttgaa 254  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  25875361 ttgattgatccatgtaacaatcaatttgatgttgcggatgaa 25875402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 4011462 - 4011714
Alignment:
Q  13 aatatgtaatcgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 112  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4011462 aatatgtaaacgaactcagggtgaaatatcaaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 4011561  T
Q  113 agttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatgttg-----------cggtaatgatatcaatc 201  Q
    | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||            ||||||||||||||||    
T  4011562 atttttgttcttttttaatgatgctaacatttcactgtcatataggatgttgtgttattgcctcctttgttggttgctgattttggtaatgatatcaatc 4011661  T
Q  202 actatgcaacattgactgatccatgtaacaatcaattcgatgttgcggttgaa 254  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  4011662 actatgcaacattgattgatccatgtaacaatcaatttgatgttgcggttgaa 4011714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 35347070 - 35347322
Alignment:
Q  13 aatatgtaatcgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35347070 aatatgtaaacgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 35347169  T
Q  113 agttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatgttg-----------cggtaatgatatcaatc 201  Q
    | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||            ||||||||||||||||    
T  35347170 atttttgttcttttttaatgatgctaacatttcactgtcatataggatgttgtgttattgcctcctttgttggttgctgattttggtaatgatatcaatc 35347269  T
Q  202 actatgcaacattgactgatccatgtaacaatcaattcgatgttgcggttgaa 254  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35347270 actatgcaacattgattgatccatgtaacaatcaatttgatgttgcggttgaa 35347322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 2274128 - 2274380
Alignment:
Q  13 aatatgtaatcgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274128 aatatgtaaacgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 2274227  T
Q  113 agttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatgttg-----------cggtaatgatatcaatc 201  Q
    | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||            ||||||||||||||||    
T  2274228 atttttgttcttttttaatgatgctaacatttcactgtcatataggatgttgtgttattgcctcctttgttggttgctgattttggtaatgatatcaatc 2274327  T
Q  202 actatgcaacattgactgatccatgtaacaatcaattcgatgttgcggttgaa 254  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  2274328 actatgcaacattgattgatccatgtaacaatcaatttgatgttgcggttgaa 2274380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 39345618 - 39345870
Alignment:
Q  13 aatatgtaatcgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 112  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39345618 aatatgtaaacgaactcagggtgaaatgtcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattat 39345717  T
Q  113 agttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatgttg-----------cggtaatgatatcaatc 201  Q
    | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||            ||||||||||||||||    
T  39345718 atttttgttcttttttaatgatgctaacatttcactgtcatataggatgttgtgttattgcctcctttgttggttgctgattttggtaatgatatcaatc 39345817  T
Q  202 actatgcaacattgactgatccatgtaacaatcaattcgatgttgcggttgaa 254  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  39345818 actatgcaacattgattgatccatgtaacaatcaatttgatgttgcggttgaa 39345870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University