View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_11 (Length: 415)
Name: NF6649_low_11
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 31643495 - 31643186
Alignment:
| Q |
1 |
gaacatactaatagtctctcggatgaagatttcgtagataacgaacatactactagtctcccggatgaagattccgtaactatt---gacttccattcac |
97 |
Q |
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| T |
31643495 |
gaacatactactagtctctcggatgaagatttcgtagataacgaacatactactagtctcccggatgaagattccgtaactattattgacttccattcac |
31643396 |
T |
|
| Q |
98 |
cttcatcgcagttggctagtaccgacattggtagtagtatgggcgaacaactcggtccttatgagaaggcgcttcaacaagaaaattcacatccggttga |
197 |
Q |
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| T |
31643395 |
cttcatcacagttggctagtaccgacattggtagtagtatgggcgaacaactcggtcattatgagaaggcgcttcaacaagaaaattcacatctggttga |
31643296 |
T |
|
| Q |
198 |
aattaaggaagaaccagataataaagaagagaataatgagttcgatttctggatggtacaatcctctgacatgcttaacttatattctaaccgaaccgga |
297 |
Q |
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| T |
31643295 |
aattaaggaagaaccagataataaagaagagaataatgagttcgattcccggatggtacaatcctttgacatgcttaacttatattctaaccgaaccgga |
31643196 |
T |
|
| Q |
298 |
gggctaacac |
307 |
Q |
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|||||||||| |
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| T |
31643195 |
gggctaacac |
31643186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 31643135 - 31643087
Alignment:
| Q |
355 |
catgcctctgtccctcttttagagatggtgaaagcttaccagacatatt |
403 |
Q |
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| T |
31643135 |
catgcctctgcccctcttttagagatggtgaaagcttaccagacatatt |
31643087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 31643510 - 31643460
Alignment:
| Q |
28 |
gatttcgtagataacgaacatactactagtctcccggatgaagattccgta |
78 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||| |||| |
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| T |
31643510 |
gatttcgtacataacgaacatactactagtctctcggatgaagatttcgta |
31643460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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