View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6649_low_14 (Length: 365)

Name: NF6649_low_14
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6649_low_14
NF6649_low_14
[»] chr7 (22 HSPs)
chr7 (4-336)||(4300293-4300629)
chr7 (17-220)||(13882821-13883022)
chr7 (17-222)||(13886321-13886526)
chr7 (17-220)||(4303207-4303404)
chr7 (17-174)||(1220613-1220772)
chr7 (17-184)||(859326-859495)
chr7 (17-184)||(1217330-1217499)
chr7 (234-344)||(13886087-13886200)
chr7 (232-337)||(1220376-1220483)
chr7 (234-314)||(1365720-1365799)
chr7 (17-61)||(1883290-1883334)
chr7 (225-296)||(22572398-22572468)
chr7 (111-220)||(5678346-5678456)
chr7 (111-220)||(5703398-5703508)
chr7 (17-62)||(4888947-4888992)
chr7 (17-54)||(29175573-29175610)
chr7 (267-314)||(8916338-8916386)
chr7 (23-61)||(1874345-1874382)
chr7 (16-54)||(3778977-3779015)
chr7 (259-307)||(1874611-1874660)
chr7 (17-61)||(13466547-13466590)
chr7 (25-61)||(30217616-30217652)
[»] chr1 (13 HSPs)
chr1 (17-220)||(50857579-50857783)
chr1 (17-184)||(13444158-13444324)
chr1 (17-184)||(13441769-13441928)
chr1 (234-344)||(13443918-13444029)
chr1 (13-220)||(8930971-8931174)
chr1 (234-348)||(23987625-23987740)
chr1 (17-61)||(43681248-43681292)
chr1 (79-222)||(42071454-42071598)
chr1 (25-61)||(31915346-31915382)
chr1 (239-336)||(40804682-40804780)
chr1 (17-61)||(31913189-31913233)
chr1 (275-347)||(9199178-9199252)
chr1 (188-220)||(12486360-12486392)
[»] chr2 (21 HSPs)
chr2 (17-220)||(27952453-27952664)
chr2 (17-220)||(27956289-27956500)
chr2 (17-220)||(33655376-33655581)
chr2 (13-184)||(15129164-15129337)
chr2 (17-220)||(31636085-31636291)
chr2 (17-176)||(22011182-22011343)
chr2 (13-220)||(22264182-22264389)
chr2 (47-220)||(31633884-31634058)
chr2 (17-220)||(2155718-2155921)
chr2 (234-335)||(27956093-27956195)
chr2 (17-220)||(2165674-2165877)
chr2 (234-343)||(33051667-33051777)
chr2 (234-334)||(31634152-31634254)
chr2 (17-137)||(35682004-35682125)
chr2 (234-296)||(2156015-2156077)
chr2 (267-334)||(28737985-28738054)
chr2 (235-307)||(36647342-36647414)
chr2 (267-335)||(32163710-32163780)
chr2 (16-48)||(31633556-31633588)
chr2 (17-62)||(1517980-1518026)
chr2 (272-336)||(23456638-23456704)
[»] chr3 (15 HSPs)
chr3 (17-220)||(53012778-53012980)
chr3 (17-184)||(43306842-43307011)
chr3 (17-178)||(43304134-43304297)
chr3 (17-220)||(3063872-3064078)
chr3 (25-184)||(3069045-3069206)
chr3 (234-335)||(43306611-43306713)
chr3 (72-220)||(45168427-45168577)
chr3 (234-335)||(3068813-3068916)
chr3 (272-344)||(368803-368874)
chr3 (171-220)||(5128814-5128863)
chr3 (126-220)||(25857652-25857746)
chr3 (122-220)||(39913363-39913461)
chr3 (127-220)||(41218666-41218758)
chr3 (17-61)||(365846-365890)
chr3 (28-61)||(2472952-2472985)
[»] chr8 (25 HSPs)
chr8 (23-220)||(42891799-42892004)
chr8 (17-220)||(22512181-22512387)
chr8 (17-220)||(22921985-22922189)
chr8 (42-220)||(6845112-6845290)
chr8 (35-220)||(23573351-23573537)
chr8 (106-215)||(42890238-42890347)
chr8 (225-344)||(18180642-18180762)
chr8 (234-337)||(22511983-22512087)
chr8 (234-337)||(22519283-22519387)
chr8 (111-220)||(22926783-22926890)
chr8 (17-142)||(18468467-18468593)
chr8 (17-184)||(23570338-23570503)
chr8 (23-220)||(37189623-37189820)
chr8 (269-344)||(42890473-42890549)
chr8 (234-344)||(42891596-42891705)
chr8 (103-220)||(18180818-18180934)
chr8 (266-345)||(26374979-26375060)
chr8 (238-336)||(37189918-37190018)
chr8 (235-307)||(2189689-2189761)
chr8 (237-347)||(16598301-16598412)
chr8 (234-347)||(2687791-2687904)
chr8 (17-62)||(24730821-24730866)
chr8 (269-344)||(24578707-24578783)
chr8 (234-296)||(22926627-22926689)
chr8 (187-220)||(22520934-22520967)
[»] chr5 (10 HSPs)
chr5 (20-220)||(40778921-40779122)
chr5 (25-220)||(21849106-21849302)
chr5 (238-347)||(19497230-19497340)
chr5 (234-337)||(21848901-21849006)
chr5 (25-116)||(21845128-21845221)
chr5 (25-116)||(21857123-21857216)
chr5 (16-126)||(19501178-19501289)
chr5 (277-347)||(9868329-9868400)
chr5 (17-54)||(8456646-8456683)
chr5 (17-54)||(26140144-26140181)
[»] chr4 (10 HSPs)
chr4 (17-220)||(6659465-6659668)
chr4 (23-184)||(22691063-22691230)
chr4 (11-184)||(24667425-24667606)
chr4 (29-220)||(22716424-22716612)
chr4 (29-220)||(22988605-22988793)
chr4 (17-220)||(13085227-13085433)
chr4 (178-220)||(13086270-13086312)
chr4 (267-314)||(7634160-7634208)
chr4 (267-298)||(54700575-54700606)
chr4 (285-347)||(22691327-22691391)
[»] chr6 (22 HSPs)
chr6 (17-220)||(30051954-30052157)
chr6 (17-220)||(30049667-30049870)
chr6 (77-220)||(3535845-3535988)
chr6 (77-220)||(3542056-3542199)
chr6 (17-220)||(29340941-29341131)
chr6 (17-141)||(11194416-11194541)
chr6 (19-220)||(11190252-11190453)
chr6 (234-334)||(18718139-18718240)
chr6 (17-137)||(18726883-18727003)
chr6 (234-337)||(11190516-11190620)
chr6 (275-346)||(24443000-24443073)
chr6 (259-341)||(8048898-8048982)
chr6 (17-101)||(18203234-18203319)
chr6 (234-289)||(30049964-30050019)
chr6 (234-296)||(3536082-3536144)
chr6 (17-58)||(22910596-22910637)
chr6 (178-220)||(26571062-26571104)
chr6 (17-54)||(22889053-22889090)
chr6 (79-141)||(26570975-26571039)
chr6 (234-278)||(3542293-3542337)
chr6 (123-220)||(3565596-3565691)
chr6 (25-61)||(8050125-8050161)
[»] scaffold0110 (3 HSPs)
scaffold0110 (72-220)||(46839-46989)
scaffold0110 (91-220)||(45397-45526)
scaffold0110 (234-295)||(46713-46774)
[»] scaffold0531 (1 HSPs)
scaffold0531 (259-341)||(11521-11605)
[»] scaffold0240 (2 HSPs)
scaffold0240 (267-336)||(16125-16196)
scaffold0240 (269-313)||(14928-14973)
[»] scaffold0090 (1 HSPs)
scaffold0090 (270-337)||(15015-15084)
[»] scaffold0054 (1 HSPs)
scaffold0054 (17-58)||(10449-10490)
[»] scaffold0251 (1 HSPs)
scaffold0251 (154-220)||(8290-8354)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 4300293 - 4300629
Alignment:
Q  4 atgtcgaagaatatgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactct--attattatta 101  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  4300293 atgtcaaagaaagtgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctaaaactctctattattatta 4300392  T
Q  102 cgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattat 201  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4300393 cgttttattttattttggcccacgggtttgttatttctttcggtatataaggagaacttatgtagcctaagagacacactttttgattcaatcaaattat 4300492  T
Q  202 tcgagattttctctcaattatcttttatcctgtaggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctg 300  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  4300493 ttgagattttctctcaattatcttttatcctttaggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctccag 4300592  T
Q  301 ttcttttcctaa-cagatcaaccatgggagatcaacc 336  Q
    ||||||||||||   ||||| ||||| ||||||||||    
T  4300593 ttcttttcctaatgtgatcagccatgagagatcaacc 4300629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 13883022 - 13882821
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactctattattattacgttttattttattt 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  13883022 tgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctattattattacgttttattttattt 13882923  T
Q  117 tggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctctc 216  Q
    ||||||||||||||||||||||||||  |||||||| |||||||| ||| ||||||||  ||||||||||||||||| |||||||| |||||||||||||    
T  13882922 tggcccacgggtttgttatttctttcactatataagcagaacttatgtatcctaagag--acactttttgattcaataaaattatttgagattttctctc 13882825  T
Q  217 aatt 220  Q
    ||||    
T  13882824 aatt 13882821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 13886526 - 13886321
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactct--attattattacgttttattttat 114  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||  |||||||||||||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctctattattattacgttttattttat 13886427  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    ||||||||||||||||||||||||||||  ||||||||  ||||||| ||| ||||||||  ||||||||||||||||| |||| |||||||||||||||    
T  13886426 tttggcccacgggtttgttatttctttcactatataagctgaacttatgtatcctaagag--acactttttgattcaataaaatcattcgagattttctc 13886329  T
Q  215 tcaattat 222  Q
    ||||||||    
T  13886328 tcaattat 13886321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 4303207 - 4303404
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactctatt-attattacgttttattttatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| || ||||||| |||||||||||||    
T  4303207 tgatgtaggagggttttattagtaatttagtagtatttattatttagccat-------taattttctagaactctctttattattatgttttattttatt 4303299  T
Q  116 ttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctct 215  Q
    |||||||||||||||||||||||||||  |||||||  || ||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  4303300 ttggcccacgggtttgttatttctttcactatataaacaggacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctct 4303399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 1220772 - 1220613
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1220673  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagag 174  Q
    || |||||||| ||||||||||||||||  |||||||  |||||||| ||||||||||||    
T  1220672 ttcggcccacgagtttgttatttctttcactatataaacagaacttatgtagcctaagag 1220613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 859495 - 859326
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 859396  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    || |||||||| ||||||||||||||||  |||||||  | |||||| ||||||||| |  |||||||||    
T  859395 ttcggcccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacactttt 859326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 1217499 - 1217330
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  1217499 tgatgcaggagggttttattagtaattcagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1217400  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    || |||||||| ||||||||||||||||  |||||||  | |||||| ||||||||| |  |||||||||    
T  1217399 ttcggcccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacactttt 1217330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 13886200 - 13886087
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttctttt-cctaac-agatcaaccatgggaga 330  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||||| ||||||||||    
T  13886200 taggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggtattagagcaggtttctcctgttcttttccctaacgtgatcagccatgggaga 13886101  T
Q  331 tcaaccgatgacga 344  Q
    ||||||||| ||||    
T  13886100 tcaaccgattacga 13886087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 1220483 - 1220376
Alignment:
Q  232 tgtaggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagca-ggtttctc-tgttcttttcctaacagatcaaccatgggag 329  Q
    ||||||||||||| ||||| | |||  ||||| ||||| ||| |||||||||||||||  |||||||| ||||||||||||||| ||||| |||||||||    
T  1220483 tgtaggtttagcgtttgctaaccctacgcttctgtactacgttagttggtatcagagcctggtttctcctgttcttttcctaacggatcagccatgggag 1220384  T
Q  330 atcaaccg 337  Q
    ||||||||    
T  1220383 atcaaccg 1220376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 1365720 - 1365799
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca 314  Q
    ||||||||||||||||| | ||| | ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  1365720 taggtttagcgcttgct-agcctatccttccgtacta-gtcagttggtatcagagcaggtttctcctgttcttttcctaaca 1365799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 1883290 - 1883334
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattt 61  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  1883290 tgatgtaggagggttttattagtaacttagtagtatttattattt 1883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 22572468 - 22572398
Alignment:
Q  225 tttatcctgtaggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttc 296  Q
    |||||| | ||||||||||||||||| | |||| |||||||| ||||||||||||| |||||||||||||||    
T  22572468 tttatcttttaggtttagcgcttgctaatcctt-gcttccgttctgcgtcagttggcatcagagcaggtttc 22572398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 5678456 - 5678346
Alignment:
Q  111 ttattttggccca--cgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga- 207  Q
    |||||||||||||  | ||||||||| ||||||  |||| |||  |||||||| | ||| ||||||||||  ||||| ||||||| |||||||||||||     
T  5678456 ttattttggcccatacaggtttgttacttcttttagtatttaaacagaacttatgcagcttaagagacac--tttttcattcaataaaattattcgagac 5678359  T
Q  208 ttttctctcaatt 220  Q
    |||||||||||||    
T  5678358 ttttctctcaatt 5678346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 5703508 - 5703398
Alignment:
Q  111 ttattttggccca--cgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga- 207  Q
    |||||||||||||  | ||||||||| ||||||  |||| |||  |||||||| | ||| ||||||||||  ||||| ||||||| |||||||||||||     
T  5703508 ttattttggcccatacaggtttgttacttcttttagtatttaaacagaacttatgcagcttaagagacac--tttttcattcaataaaattattcgagac 5703411  T
Q  208 ttttctctcaatt 220  Q
    |||||||||||||    
T  5703410 ttttctctcaatt 5703398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattta 62  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtattt 54  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 8916386 - 8916338
Alignment:
Q  267 actgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaaca 314  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  8916386 actgcgtcagttggtaacagagtaggtttctcttgttcttttcctaaca 8916338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 1874345 - 1874382
Alignment:
Q  23 aggagggttttattagtaatttagtagtatttattattt 61  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  1874345 aggagggtttt-ttagtaatttagtagtatttattattt 1874382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 3779015 - 3778977
Alignment:
Q  16 atgatgtaggagggttttattagtaatttagtagtattt 54  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  3779015 atgatgtaggaggattttcttagtaatttagtagtattt 3778977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 1874611 - 1874660
Alignment:
Q  259 gcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttctttt 307  Q
    ||||||||||| |||||||||||||| |||||||| ||| ||||||||||    
T  1874611 gcttccgtactacgtcagttggtatcggagcaggtatctcctgttctttt 1874660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 13466547 - 13466590
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattt 61  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||    
T  13466547 tgatgcaggagggttttat-agtaatttagttgtatttattattt 13466590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 30217616 - 30217652
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattattt 61  Q
    ||||||||||| | |||||||||||||||||||||||    
T  30217616 gagggttttataactaatttagtagtatttattattt 30217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 50857783 - 50857579
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||||| |||||| ||||||    
T  50857783 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 50857684  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    || ||||||||||||||||||| |||||  |||||||| |||||||| | |||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  50857683 tt-ggcccacgggtttgttattactttcactatataagcagaacttatgcagcctaagaggcacactttttgatacaataaaattattcgagattttctc 50857585  T
Q  215 tcaatt 220  Q
    ||||||    
T  50857584 tcaatt 50857579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 13444324 - 13444158
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaa--ctctattattattacgttttattttat 114  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||   |||||||||||| |||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttcaagaattttctattattatttcgttttattttat 13444225  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    ||||||||  |||||||||||   ||||  |||||||| |||||||| |||||||||||| |||| ||||    
T  13444224 tttggcccgtgggtttgttat---tttcactatataagcagaacttatgtagcctaagaggcacattttt 13444158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 13441928 - 13441769
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactctattattattacgttttattttattt 116  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||| |||||||||||||||    
T  13441928 tgatgcagaagggttttgttagtaatttagtagtatttattatttagccaaatcatagtaattttcta--------ttattatttcgttttattttattt 13441837  T
Q  117 tggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    || |||  ||||||||||||||||||  ||||||||  |||||||  ||||||||||| |||||||||    
T  13441836 tgacccgagggtttgttatttctttcactatataagctgaacttatatagcctaagaggcacactttt 13441769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 13444029 - 13443918
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaacagatcaaccatgggagatc 332  Q
    ||||||||| ||||| | | ||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
T  13444029 taggtttagtgcttgttaaccctatgcttccgaactgcgtcagttggtatcagagcaggtttatcatgttcttttcctaacggatcagccatgggagatc 13443930  T
Q  333 aaccgatgacga 344  Q
    ||| ||||||||    
T  13443929 aactgatgacga 13443918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 8930971 - 8931174
Alignment:
Q  13 aatatgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttatt 110  Q
    ||||||||||||||||  ||  ||||||||||   |||||||  | ||||| |||| | |||| |||||||||||||  |||||||||||  ||||| ||    
T  8930971 aatatgatgtaggaggacttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctattattattttgttttgtt 8931069  T
Q  111 ttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattt 210  Q
    ||||||||||||||| ||||||||||||||||  |||||||| |||| ||| | ||||   |||||||||||||| | ||| | | | ||||||||||||    
T  8931070 ttattttggcccacgagtttgttatttctttcactatataagcagaa-ttatgcagcc---gagacacactttttta-tcattaataatattcgagattt 8931164  T
Q  211 tctctcaatt 220  Q
    ||||||||||    
T  8931165 tctctcaatt 8931174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 348
Target Start/End: Original strand, 23987625 - 23987740
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaac-agatcaaccatgggagat 331  Q
    |||||| |||||||||| | |||  ||||||| | ||||||||||||||| | |||||||||||| ||||||||||||| |  |||||  ||||||||||    
T  23987625 taggttcagcgcttgct-accctacgcttccgaattgcgtcagttggtattaaagcaggtttctcttgttcttttcctagcgtgatcaggcatgggagat 23987723  T
Q  332 caaccgatgacgaaagt 348  Q
    |||||| ||||||||||    
T  23987724 caaccggtgacgaaagt 23987740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 43681248 - 43681292
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattt 61  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  43681248 tgatgtaggatggttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 42071598 - 42071454
Alignment:
Q  79 tttctagaact--ctattattattacgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaac-ttacgtagcctaagaga 175  Q
    |||||||||||  ||||||||||| ||||||||||||||| ||||||  ||||||||||||||||   ||| |||  | ||| ||| | |||||||||      
T  42071598 tttctagaactttctattattatttcgttttattttatttcggcccaaaggtttgttatttcttttgctatttaaacataacattatgcagcctaagatg 42071499  T
Q  176 cacactttttg-attcaatcaaattattcgagattttctctcaattat 222  Q
    ||   |||||| ||||||| ||||||||||||||| ||||||||||||    
T  42071498 ca---tttttgaattcaataaaattattcgagattctctctcaattat 42071454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 31915346 - 31915382
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattattt 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  31915346 gagggttttattagtaatttagtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 40804682 - 40804780
Alignment:
Q  239 ttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac-agatcaaccatgggagatcaacc 336  Q
    |||||||||||| |||  |||||||||| |||  ||||||||||||||  || |||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  40804682 ttagcgcttgct-aactcttgcttccgttctggatcagttggtatcagtccatgtttctcctgttcttttcctaacgcgatcagccatgggagatcaacc 40804780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 31913189 - 31913233
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattt 61  Q
    |||||| | |||||||||||||||||||||||||||||| |||||    
T  31913189 tgatgttgaagggttttattagtaatttagtagtatttagtattt 31913233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 9199252 - 9199178
Alignment:
Q  275 agttggtatcagagcaggtttctc-tgttcttttcctaaca-gatcaaccatgggagatcaaccgatgacgaaag 347  Q
    |||| ||||||||||||| || || |||||||||| ||||| | ||||||||||||| ||||||| |||||||||    
T  9199252 agtttgtatcagagcaggcttttcctgttcttttcgtaacatgttcaaccatgggagttcaaccggtgacgaaag 9199178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 12486392 - 12486360
Alignment:
Q  188 ttcaatcaaattattcgagattttctctcaatt 220  Q
    |||||| ||||||||||||||||||||||||||    
T  12486392 ttcaataaaattattcgagattttctctcaatt 12486360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 27952664 - 27952453
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  27952664 tgatgtaggagggttttattaataatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttat 27952565  T
Q  115 tttggcccacgggtttgttattt------ctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagat 208  Q
    |||||||||||||||||||||||      || ||  |||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  27952564 tttggcccacgggtttgttatttctatcactatcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagat 27952465  T
Q  209 tttctctcaatt 220  Q
    ||||||||||||    
T  27952464 tttctctcaatt 27952453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 27956500 - 27956289
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  27956500 tgatgtaggagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttat 27956401  T
Q  115 tttggcccacgggtttgttattt------ctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagat 208  Q
    ||| |||||||||||||||||||      || ||  |||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  27956400 tttagcccacgggtttgttatttctatcactatcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagat 27956301  T
Q  209 tttctctcaatt 220  Q
    ||||||||||||    
T  27956300 tttctctcaatt 27956289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 33655376 - 33655581
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||  |||||||||||  ||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 33655475  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    || |||||||||||||||||||||||||  ||||||||||||||  |  ||||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  33655476 ttcggcccacgggtttgttatttctttcactatataaggagaaccaatttagcctaagaggcacactttttcattcaataaaattattcgagattttctc 33655575  T
Q  215 tcaatt 220  Q
    ||||||    
T  33655576 tcaatt 33655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 15129164 - 15129337
Alignment:
Q  13 aatatgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttatt 110  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||  ||||||||||| |||||||||    
T  15129164 aatatgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttctagaacttcctattattatttcgttttatt 15129263  T
Q  111 ttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    |||||| |||||||||||||||||||||||||  |||||||| |||||||| |||||||||||| |||||||||    
T  15129264 ttatttcggcccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt 15129337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 31636085 - 31636291
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  31636085 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 31636184  T
Q  115 tttggcccacgggtttgttatttcttt--ccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttc 212  Q
    ||||||||||  |||||||||||||||  |  |||||||| |||||||| |||||| |||||||| ||||||| ||||| | | | ||||| ||||||||    
T  31636185 tttggcccacatgtttgttatttctttcactatatataagtagaacttatgtagccgaagagaca-acttttttattcattaataatattcaagattttc 31636283  T
Q  213 tctcaatt 220  Q
    ||||||||    
T  31636284 tctcaatt 31636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 22011182 - 22011343
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||| |||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||||| |||||||||||||    
T  22011182 tgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 22011281  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagac 176  Q
    |||||||||||||| |||||||||||||  |||||||| | |||||| ||||||||||||||    
T  22011282 tttggcccacgggtctgttatttctttcactatataagcaaaacttatgtagcctaagagac 22011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 22264182 - 22264389
Alignment:
Q  13 aatatgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttatt 110  Q
    ||||||||| || ||| |||| ||||||||||||||||||||  | |||||||||| | ||||||||||||||||||  |||||||||||  ||||| ||    
T  22264182 aatatgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctattattattttgttttgtt 22264280  T
Q  111 ttattttggcccacgggtttgttatttctttccgtatataaggagaac-ttacgtagcctaagagacacactttttgattcaatcaaattattcgagatt 209  Q
    |||||| ||| |||||||||||||||||||||  ||| |||| | ||| ||| | |||||||||| |||  ||||||||||||| |||||||||||||||    
T  22264281 ttatttcggctcacgggtttgttatttctttcgctatttaagcataacattatgcagcctaagaggcac--tttttgattcaataaaattattcgagatt 22264378  T
Q  210 ttctctcaatt 220  Q
    || ||||||||    
T  22264379 ttatctcaatt 22264389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 31633884 - 31634058
Alignment:
Q  47 tagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttattttggcccacgggtttgttatttctttccg 144  Q
    |||||||||||||||||||||| | ||||||||||||||||||  ||||||||||| | ||||||||||||| |||||||| ||||||||||||||||      
T  31633884 tagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcattttattttatttcggcccacgagtttgttatttctttcac 31633983  T
Q  145 tatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    |||||||| |||||||| | |||| ||||| || ||||||| ||||| | | | |||| |||||||||||||||||    
T  31633984 tatataagtagaacttatgcagccgaagaggca-acttttttattcattaataatatttgagattttctctcaatt 31634058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 2155718 - 2155921
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||||||  ||||||||||  ||||||||  | ||||| |||| | |||| |||||||||||||  |||||||||||  ||||| ||||||    
T  2155718 tgatgtaggagggtttccttagtaattttatagtattttat-tttagtcaaatcttagtgattttctagaactttctattattattttgttttgttttat 2155816  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttct 213  Q
    ||||||||||| ||||||||||||||||  |||||||| |||||||| | ||||||||||||||||||||  ||||||| | | ||||| ||| ||||||    
T  2155817 tttggcccacgtgtttgttatttctttcactatataagcagaacttatgcagcctaagagacacactttt--attcaataataatattcaagacttttct 2155914  T
Q  214 ctcaatt 220  Q
    |||||||    
T  2155915 ctcaatt 2155921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 27956195 - 27956093
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaacagatcaaccatgggagatc 332  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  27956195 taggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaacggatcagccatgggagatc 27956096  T
Q  333 aac 335  Q
    |||    
T  27956095 aac 27956093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 2165674 - 2165877
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactct--attattattacgttttattttat 114  Q
    ||||||||||| ||||  ||||||||||  ||||||||  | ||||| |||| | |||| ||||| ||||||| |  |||||||||  ||||| ||||||    
T  2165674 tgatgtaggagagtttccttagtaattttatagtattttat-tttagtcaaatcttagtgattttttagaactttgtattattattttgttttgttttat 2165772  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttct 213  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||| | |||||||||||||||  |||| ||||| | | | ||||||||| ||||||    
T  2165773 tttggcccacgagtttgttatttctttcactatataaggagaacttatgcagcctaagagacaca--tttttattcattaataatattcgagacttttct 2165870  T
Q  214 ctcaatt 220  Q
    |||||||    
T  2165871 ctcaatt 2165877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 33051667 - 33051777
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac-agatcaaccatgggagat 331  Q
    ||||||||||||||||| | |||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||||    
T  33051667 taggtttagcgcttgct-agcctaagcttccgtactacgtcagttggtatcagagcaggtttctcctgttcttttcctaacgtgatcagccatgagagat 33051765  T
Q  332 caaccgatgacg 343  Q
    |||| |||||||    
T  33051766 caacagatgacg 33051777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 31634152 - 31634254
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca-gatcaaccatgggagat 331  Q
    ||||||||||| ||||| | |||  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |||||||||    
T  31634152 taggtttagcgtttgctaaccctacgcttccgtactgcgtcagttggtatcatagcaggtttctcctgttcttttcctagcatgatcaactatgggagat 31634251  T
Q  332 caa 334  Q
    |||    
T  31634252 caa 31634254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 35682004 - 35682125
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||| ||||||||||| ||||||||||  ||||||||  | |||||||||| | ||||||||||||||||||  ||||| ||||| |||||| ||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttat-tttagccaaatcttagtaattttctagaactttctattgttatttcgttttgttttat 35682102  T
Q  115 tttggcccacgggtttgttattt 137  Q
    || | ||||| ||||||||||||    
T  35682103 ttggacccacaggtttgttattt 35682125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 2156015 - 2156077
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttc 296  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||| |||||||||||||||    
T  2156015 taggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggcatcagagcaggtttc 2156077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 28737985 - 28738054
Alignment:
Q  267 actgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaaca-gatcaaccatgggagatcaa 334  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||||| ||||| ||||||||||||||    
T  28737985 actgcgtcagttggtatcagagcagatttctcttgtgcttttcctaacatgatcagccatgggagatcaa 28738054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 36647342 - 36647414
Alignment:
Q  235 aggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctc-tgttctttt 307  Q
    |||||||||||||||| | |||  |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  36647342 aggtttagcgcttgct-agcctacgcttccgtactgcgtcagttggtatcagagcatgtttctcatgttctttt 36647414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 32163780 - 32163710
Alignment:
Q  267 actgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca-gatcaaccatgggagatcaac 335  Q
    ||||||||||||||||| ||||||  ||||| || |||||||||||||  |||||||||||||||||||||    
T  32163780 actgcgtcagttggtattagagcatatttcttctattcttttcctaacgtgatcaaccatgggagatcaac 32163710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 31633556 - 31633588
Alignment:
Q  16 atgatgtaggagggttttattagtaatttagta 48  Q
    |||||||||||||||||||||||||||||||||    
T  31633556 atgatgtaggagggttttattagtaatttagta 31633588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 1517980 - 1518026
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagta-tttattattta 62  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  1517980 tgatgcaggagggttttcttagtaatttagtagtattttattattta 1518026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 23456638 - 23456704
Alignment:
Q  272 gtcagttggtatcagagcaggtttc-tctgttcttttcctaac-agatcaaccatgggagatcaacc 336  Q
    ||||||||||||||||||| ||||| | |||||||||||||||  ||||| ||||| ||||||||||    
T  23456638 gtcagttggtatcagagcaagtttcttttgttcttttcctaacgtgatcagccatgagagatcaacc 23456704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 53012778 - 53012980
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactctattattattacgttttattttattt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactctattattattatgttttattttattt 53012877  T
Q  117 tggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctct 215  Q
    | ||||||||||||||||||||||||  |||||||| | |||| | |||||||||||| |||||||||  ||||| | | | ||||||||| ||||||||    
T  53012878 tagcccacgggtttgttatttctttcactatataagcataactaatgtagcctaagaggcacactttt--attcattaataatattcgagacttttctct 53012975  T
Q  216 caatt 220  Q
    |||||    
T  53012976 caatt 53012980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 43307011 - 43306842
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaacattctattattatttcgttttattttat 43306912  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    |||||||||||| |||||||||||||||  |||||||| |||||||| |||||||||||| |||||||||    
T  43306911 tttggcccacggttttgttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt 43306842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 43304297 - 43304134
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||  |||||| |||| |||||||||||||    
T  43304297 tgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttctataactttctattagtatttcgttttattttat 43304198  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacac 178  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||    
T  43304197 tttggcccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagagacac 43304134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 3064078 - 3063872
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactc--tattattat--tacgttttatttt 112  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||  |||||||||  |||||||||||||    
T  3064078 tgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaattctctagaactcgttattattatattacgttttatttt 3063979  T
Q  113 attttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-tttt 211  Q
    ||||||||||||||||||||||||||||||  |||||||| | |||||| ||||||||||||  ||||||||  ||||| | | | ||||||||| ||||    
T  3063978 attttggcccacgggtttgttatttctttcactatataagcataacttatgtagcctaagaggtacactttt--attcattaataatattcgagactttt 3063881  T
Q  212 ctctcaatt 220  Q
    |||||||||    
T  3063880 ctctcaatt 3063872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 3069206 - 3069045
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactc--tattattattacgttttattttattttggccc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||  |||||||||||||||||||||||||||||| |    
T  3069206 gagggttttattagtaatttagtagtatttattatttagccaaatctttgtaattctctagaactcactattattattacgttttattttattttggcac 3069107  T
Q  123 acgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    ||| ||||||||||||||||  |||||||| | |||||| |||||||||||  |||||||||    
T  3069106 acgagtttgttatttctttcactatataagcataacttatgtagcctaagatgcacactttt 3069045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 43306713 - 43306611
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaacagatcaaccatgggagatc 332  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  43306713 taggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaacggatcagccatgggagatc 43306614  T
Q  333 aac 335  Q
    |||    
T  43306613 aac 43306611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 45168577 - 45168427
Alignment:
Q  72 tagtaattttctagaac--tctattattattacgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcct 169  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||  | ||||| ||||||||||||||||  |||||||| |||| ||| | || ||    
T  45168577 tagtaattttctaaaaccttctattattatttcgttttattttatttcagtccacgagtttgttatttctttcactatataagcagaagttatgcagact 45168478  T
Q  170 aagagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    ||||| || | ||||| ||||||| ||||||||||||||||||||||||||    
T  45168477 aagaggcatatttttttattcaataaaattattcgagattttctctcaatt 45168427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 3068916 - 3068813
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca-gatcaaccatgggagat 331  Q
    ||||||||||||||||| | | |  ||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||| ||| | |||||||||||    
T  3068916 taggtttagcgcttgctaaccatacgcttccgtactgcgtcagttggtattagagcatgtttctcctgttctcttcctaacatgataagccatgggagat 3068817  T
Q  332 caac 335  Q
    ||||    
T  3068816 caac 3068813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 368874 - 368803
Alignment:
Q  272 gtcagttggtatcagagcaggtttctctgttcttttcctaacagatcaaccatgggagatcaaccgatgacga 344  Q
    |||||||| ||||||||||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  368874 gtcagttgttatcagagcaggtttctcc-ttctttttctaacggatcagccatgggagatcaaccgatgacga 368803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 5128814 - 5128863
Alignment:
Q  171 agagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  5128814 agaggcacactttttgattcaataaaattattcgagattttctctcaatt 5128863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 25857652 - 25857746
Alignment:
Q  126 ggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
    ||||||||||||||||  |||| |||| | |||||| ||||||||||||||||||||||| ||||||| | | |||| |||| |||||||||||||    
T  25857652 ggtttgttatttcttttagtatttaagcataacttatgtagcctaagagacacacttttt-attcaataataatatttgagacttttctctcaatt 25857746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 39913461 - 39913363
Alignment:
Q  122 cacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
    ||||||||||||||||||||  |||| |||  |||||||| | |||||||||| |||| ||||||||||||| ||| ||||||||| ||||||| |||||    
T  39913461 cacgggtttgttatttcttttagtatttaaacagaacttatgcagcctaagaggcaca-tttttgattcaataaaaatattcgagacttttctcccaatt 39913363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 41218666 - 41218758
Alignment:
Q  127 gtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
    |||||||||||||||  |||| |||| |||||||| | ||||||||||||||||||||  ||||||| | | ||||||||| |||||||||||||    
T  41218666 gtttgttatttcttttagtatttaagcagaacttatggagcctaagagacacactttt--attcaataataatattcgagacttttctctcaatt 41218758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 365890 - 365846
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattt 61  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  365890 tgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 2472985 - 2472952
Alignment:
Q  28 ggttttattagtaatttagtagtatttattattt 61  Q
    ||||||||||||||||||||||||||||||||||    
T  2472985 ggttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 42892004 - 42891799
Alignment:
Q  23 aggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttattttggc 120  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||||||||||| ||    
T  42892004 aggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaactttctattattatttcgttttattttattttagc 42891905  T
Q  121 ccacgggtttgttattt------ctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    |||||||||||||||||      || ||  |||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  42891904 ccacgggtttgttatttctatcactatcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattatttgagattttctc 42891805  T
Q  215 tcaatt 220  Q
    ||||||    
T  42891804 tcaatt 42891799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 22512387 - 22512181
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||  | |||||||||| ||||| |||||||    
T  22512387 tgatgcaggagagttttattagtaatttagtagtatttattatttagctaaatcttagtaattttctagaactttatattattatttcgtttcattttat 22512288  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacac-tttttgattcaatcaaattattcgagattttct 213  Q
    || ||||||| ||||| |||||||||||  |||||||| || ||||| ||| |||||||| ||||| ||||| ||||||| |||||||||||||||||||    
T  22512287 ttcggcccacaggtttattatttctttcactatataagcagcacttatgtaacctaagagtcacactttttttattcaataaaattattcgagattttct 22512188  T
Q  214 ctcaatt 220  Q
    |||||||    
T  22512187 ctcaatt 22512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 22922189 - 22921985
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||| ||  ||||||||||  ||||||||  | ||||| |||| | |||| |||||||||||||  |||||||||||  ||||| ||||||    
T  22922189 tgatgtaggagggcttccttagtaattttatagtattttat-tttagtcaaatcttagtgattttctagaactttctattattattttgttttgttttat 22922091  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    ||||||||||||||||||||||||||||  |||||| | |||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  22922090 tttggcccacgggtttgttatttctttcactatatatgcagaacttatgcagcctaagagacacaccttttgattcaataaaattattcgagattttctc 22921991  T
Q  215 tcaatt 220  Q
    ||||||    
T  22921990 tcaatt 22921985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 6845112 - 6845290
Alignment:
Q  42 tttagtagtatttattatttagccaaaacatagtaattttctagaactct--attattattacgttttattttattttggcccacgggtttgttatttct 139  Q
    |||| ||||||||||||||||| |||| | ||||||||||||| ||||||  ||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttctaaaactctctattattattacgtttgattttattttggcctacgagtttgttatttct 6845211  T
Q  140 ttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    |||  |||||||| |||||||| ||| ||||||||  ||||||||||||||| | | | ||||||||||||||||||||||    
T  6845212 ttcactatataagcagaacttatgtatcctaagag--acactttttgattcattaataatattcgagattttctctcaatt 6845290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 23573351 - 23573537
Alignment:
Q  35 ttagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttattttggcccacgggtttgt 132  Q
    ||||||||||  |||||||||||||||| ||||| | ||||||||||||||||||  ||||| ||||| ||||||||||||||| ||| ||| |||||||    
T  23573351 ttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcggctcacaggtttgt 23573450  T
Q  133 tatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
    ||||||||||  ||||||||  ||||||| |||||||||||| |||||||||  ||||| | | | ||||||||| |||||||||||||    
T  23573451 tatttctttcgctatataagcggaacttatgtagcctaagaggcacactttt--attcattaataatattcgagacttttctctcaatt 23573537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 42890238 - 42890347
Alignment:
Q  106 ttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcga 205  Q
    |||||||||||||||||||||||||||||||||||||  || ||||| | |||||| |||||||||||| |||||||||||||||||| |||||||||||    
T  42890238 ttattttattttggcccacgggtttgttatttctttcactacataagcaaaacttatgtagcctaagaggcacactttttgattcaataaaattattcga 42890337  T
Q  206 gattttctct 215  Q
    ||||||||||    
T  42890338 gattttctct 42890347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 344
Target Start/End: Complemental strand, 18180762 - 18180642
Alignment:
Q  225 tttatcctgtaggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca-gatcaacc 322  Q
    |||||||| ||||||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||    
T  18180762 tttatcctttaggtttagcgcttgct-agcctacgcttccgtactgcgtcagttggtatcaaagcaggtttctcctgttcttttcctaacatgatcagcc 18180664  T
Q  323 atgggagatcaaccgatgacga 344  Q
    |||||||||||||  |||||||    
T  18180663 atgggagatcaacttatgacga 18180642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 22512087 - 22511983
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaacagatcaaccatgggagatc 332  Q
    ||||||||||||||||| | |||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||    
T  22512087 taggtttagcgcttgctaaccctacacttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaatggatcagccatgggagatc 22511988  T
Q  333 aaccg 337  Q
    |||||    
T  22511987 aaccg 22511983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 22519387 - 22519283
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaacagatcaaccatgggagatc 332  Q
    ||||||||||||||||| | |||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||    
T  22519387 taggtttagcgcttgctaaccctacacttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaatggatcagccatgggagatc 22519288  T
Q  333 aaccg 337  Q
    |||||    
T  22519287 aaccg 22519283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 22926890 - 22926783
Alignment:
Q  111 ttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattt 210  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||   ||| ||||||| ||| ||||||||||||    
T  22926890 ttattttggcccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagagacaca--atttaattcaataaaaatattcgagattt 22926793  T
Q  211 tctctcaatt 220  Q
    ||||||||||    
T  22926792 tctctcaatt 22926783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 18468467 - 18468593
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||| ||  ||||||||||  ||||||||  | |||| ||||| | ||||||||||||||||||  ||||||||||| |||||| ||||||    
T  18468467 tgatgtaggagggcttccttagtaattttatagtattttat-tttaaccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 18468565  T
Q  115 tttggcccacgggtttgttatttctttc 142  Q
    ||||||||||||||||||||||||||||    
T  18468566 tttggcccacgggtttgttatttctttc 18468593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 23570338 - 23570503
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||||||  ||||||||||  ||||||||||||||||  |||| | ||||||||||||||||||  ||||| ||||| |||||||||||||    
T  23570338 tgatgtaggagggtttc-ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatttttatttcgttttattttat 23570436  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    || | |||||  ||||||||||||||||  ||||||||  |||||||    ||||||||| |||||||||    
T  23570437 ttcgacccacatgtttgttatttctttcactatataagcggaactta---tgcctaagaggcacactttt 23570503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 37189623 - 37189820
Alignment:
Q  23 aggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactctat--tattattacgttttattttattttggc 120  Q
    ||||| ||||| ||||||||||||||||||||  | |||||||||| | |||||| ||| ||||||| |||  |||||||  ||||||||||||||||||    
T  37189623 aggagagttttcttagtaatttagtagtattttat-tttagccaaatcttagtaactttttagaactttatattattattttgttttattttattttggc 37189721  T
Q  121 ccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
     | || ||||||||||||||||  |||||||  ||||| || |||||| |||||  ||||||||| ||||| | | | ||||||||||||| ||||||||    
T  37189722 tcccgagtttgttatttctttcgctatataaacagaacatatgtagcccaagaggtacacttttttattcattaataatattcgagatttt-tctcaatt 37189820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 42890473 - 42890549
Alignment:
Q  269 tgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaacagatcaaccatgggagatcaaccgatgacga 344  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  42890473 tgcgtcagttggtatcagagcaggtttctcctgttcttttcctaacagatcagccatgggagatcaactgatgacga 42890549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 42891705 - 42891596
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctctgttcttttcctaacagatcaaccatgggagatca 333  Q
    |||||||||||||||||   |||  ||||||||| ||||||||||||||||| ||||||||||||  | ||||||||||| ||||| |||||||||||||    
T  42891705 taggtttagcgcttgctagccctacgcttccgtattgcgtcagttggtatcaaagcaggtttctc-ctacttttcctaacggatcagccatgggagatca 42891607  T
Q  334 accgatgacga 344  Q
    || ||||||||    
T  42891606 actgatgacga 42891596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 18180934 - 18180818
Alignment:
Q  103 gttttattttattttggcccacgggtttgttatttctttccgtatataaggagaac-ttacgtagcctaagagacacactttttgattcaatcaaattat 201  Q
    |||||||||||||| |||||||  |||||||||||||||   ||| |||  ||||| ||| |||||||||||| |||  ||||||||||||| |||||||    
T  18180934 gttttattttatttcggcccacatgtttgttatttcttttgttatttaaacagaacattatgtagcctaagaggcac--tttttgattcaataaaattat 18180837  T
Q  202 tcgagattttctctcaatt 220  Q
    |||||||||||||||||||    
T  18180836 tcgagattttctctcaatt 18180818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 26374979 - 26375060
Alignment:
Q  266 tactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca-gatcaaccatgggagatcaaccgatgacgaa 345  Q
    |||||| ||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  26374979 tactgcatcagttggtatcagagcaggtttctcctattcttttcctaacatgatcacccatgggagatcaactgatgacgaa 26375060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 37189918 - 37190018
Alignment:
Q  238 tttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttc-tctgttcttttcctaac-agatcaaccatgggagatcaac 335  Q
    ||||| ||||||| | |||  ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||  ||||| |||||||||||||||    
T  37189918 tttagagcttgctaaccctaagcttccgtactgcgtcaattggtatcagagcagatttcttctgttcttttcctaacgtgatcagccatgggagatcaac 37190017  T
Q  336 c 336  Q
    |    
T  37190018 c 37190018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 2189761 - 2189689
Alignment:
Q  235 aggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctc-tgttctttt 307  Q
    |||||||||||||||| | |||  |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  2189761 aggtttagcgcttgct-agcctacgcttccgtactgcgtcagttggtatcagagcatgtttctcatgttctttt 2189689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 16598301 - 16598412
Alignment:
Q  237 gtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaaca-gatcaaccatgggagatcaa 334  Q
    |||||||||||||| |||| ||||||||||  | ||| ||||||||| |||| ||||||||| ||| |||||||||||  || || ||||||||||||||    
T  16598301 gtttagcgcttgct-aaccattgcttccgttttacgttagttggtattagagtaggtttctcctgtccttttcctaacttgagcatccatgggagatcaa 16598399  T
Q  335 ccgatgacgaaag 347  Q
    ||| |||||||||    
T  16598400 ccggtgacgaaag 16598412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 2687791 - 2687904
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac-agatcaaccatgggagat 331  Q
    ||||||||||||| ||| |  ||| ||||||| ||||| |||| |||||||||||||||||||| ||||||||||| ||||  |||||||||||| ||||    
T  2687791 taggtttagcgctcgct-agtcttcgcttccg-actgcatcaggtggtatcagagcaggtttctcctgttcttttcataacgtgatcaaccatggaagat 2687888  T
Q  332 caaccgatgacgaaag 347  Q
    |||| | |||||||||    
T  2687889 caactggtgacgaaag 2687904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattattta 62  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 24578783 - 24578707
Alignment:
Q  269 tgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaacagatcaaccatgggagatcaaccgatgacga 344  Q
    ||||||| ||||||||||||||||||||| || |||||||| ||   ||||| |||||| |||||||||||||||||    
T  24578783 tgcgtcaattggtatcagagcaggtttctcctattcttttcgtacgtgatcagccatggaagatcaaccgatgacga 24578707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 22926689 - 22926627
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttc 296  Q
    |||||||||||||| || | |||  ||||||||||| |||||||||| |||||||||||||||    
T  22926689 taggtttagcgctttctaaccctacgcttccgtactacgtcagttggcatcagagcaggtttc 22926627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 22520967 - 22520934
Alignment:
Q  187 attcaatcaaattattcgagattttctctcaatt 220  Q
    ||||||| ||||||||||||||||||||||||||    
T  22520967 attcaataaaattattcgagattttctctcaatt 22520934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 40779122 - 40778921
Alignment:
Q  20 tgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttatttt 117  Q
    |||||||||||||  ||||||||||   ||||||||||||||||||||| | ||||||||||||||||||  ||||||||||| |||||||||||||||     
T  40779122 tgtaggagggtttc-ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttatttc 40779024  T
Q  118 ggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctctca 217  Q
    |||||||| |||| |||||||||||  |||||||| |||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  40779023 ggcccacgtgtttattatttctttcactatataagcagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagattttctctca 40778924  T
Q  218 att 220  Q
    |||    
T  40778923 att 40778921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 21849302 - 21849106
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttattttggccc 122  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||| | ||||||||||||||||||  ||||| |||||  |||||||||||||| |||||    
T  21849302 gagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttatttcggccc 21849203  T
Q  123 acgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    ||||||||||||||||||||  ||||||||   |||||| ||||||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  21849202 acgggtttgttatttctttcactatataagcgaaacttatgtagcctaa-aggtacactttttgattcaataaaattattcgagattttctctcaatt 21849106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 347
Target Start/End: Complemental strand, 19497340 - 19497230
Alignment:
Q  238 tttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac-agatcaaccatgggagatcaac 335  Q
    ||||||||||||| | ||||  ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||  |||| ||||||||||||||||    
T  19497340 tttagcgcttgctaatcctta-cttccgtaccgcgtcagttgatatcagagcaggtttctcctgttcttttcctaacgtgatccaccatgggagatcaac 19497242  T
Q  336 cgatgacgaaag 347  Q
    |||||| |||||    
T  19497241 cgatgatgaaag 19497230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 21849006 - 21848901
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac-agatcaaccatgggagat 331  Q
    ||||||| ||||||||| | |||  |||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||  ||||| |||||||||||    
T  21849006 taggtttggcgcttgctaaccctacgcttccgtactgcgtcggttggtatcagagcaggtttctcctgttttttccctaacgtgatcagccatgggagat 21848907  T
Q  332 caaccg 337  Q
    ||||||    
T  21848906 caaccg 21848901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 21845221 - 21845128
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttattt 116  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||| | |||||||||||||||||  |||||| |||||  ||||||||||||||    
T  21845221 gagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttattt 21845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 21857216 - 21857123
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttattt 116  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||| | |||||||||||||||||  |||||| |||||  ||||||||||||||    
T  21857216 gagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttattt 21857123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 19501289 - 19501178
Alignment:
Q  16 atgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttatttta 113  Q
    |||||||||||||||||  ||||||||||  |||||||| |  |||| ||||| | ||||||||||||| |||  ||||||||||||  ||||| |||||    
T  19501289 atgatgtaggagggtttctttagtaattttatagtattt-tattttacccaaatcttagtaattttctaaaactttctattattattttgttttgtttta 19501191  T
Q  114 ttttggcccacgg 126  Q
    ||| |||||||||    
T  19501190 tttcggcccacgg 19501178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 9868400 - 9868329
Alignment:
Q  277 ttggtatcagagcaggtttctctgttcttttcctaac-agatcaaccatgggagatcaaccgatgacgaaag 347  Q
    |||||||||||||||||||  |||||||||| |||||  ||||| ||||||||||||||||| |||| ||||    
T  9868400 ttggtatcagagcaggttttcctgttctttttctaacgtgatcagccatgggagatcaaccggtgacaaaag 9868329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 8456683 - 8456646
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtattt 54  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  8456683 tgatgtaggagggttttcttagtaatctagtagtattt 8456646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 26140144 - 26140181
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtattt 54  Q
    ||||||||||||||||||||| || |||||||||||||    
T  26140144 tgatgtaggagggttttattaatagtttagtagtattt 26140181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 6659668 - 6659465
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||||||  ||||||||||   ||||||||||||||||||||| | ||||||||||||||||||  |||||||||||  ||||||||||||    
T  6659668 tgatgtaggagggtttc-ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 6659570  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    || |||||| |  |||||||||||||||  |||||||| |||||||| |||||||||||| || ||||||||||||| | ||| ||||||||||||||||    
T  6659569 ttcggcccatgaatttgttatttctttcactatataagcagaacttatgtagcctaagaggca-actttttgattcactaaaactattcgagattttctc 6659471  T
Q  215 tcaatt 220  Q
    ||||||    
T  6659470 tcaatt 6659465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 22691063 - 22691230
Alignment:
Q  23 aggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttattttggc 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||  | |||||||||| |||||||||||||||  ||    
T  22691063 aggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttctagaactttgtattattatttcgttttattttatttcagc 22691162  T
Q  121 ccacgggtttg----ttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
    |||| ||||||    |||||||||||  |||||||| |||||||| |||||||||||| |||||||||    
T  22691163 ccactggtttgttatttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt 22691230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 24667425 - 24667606
Alignment:
Q  11 agaatatgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--------ctattattattac 102  Q
    ||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||| | |||||||||| ||| | |        ||||||||||| |    
T  24667425 agaatatgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaattttttagtaattcatctttctattattatttc 24667524  T
Q  103 gttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttt 184  Q
     ||||||||||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||||||| |||||||||    
T  24667525 attttattttatttcggtccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 24667606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 22716424 - 22716612
Alignment:
Q  29 gttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttattttggcccacgg 126  Q
    ||||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||  |||||||||||| | |||||||||||||  ||||||||    
T  22716424 gttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccacgg 22716523  T
Q  127 gtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
     ||||||||||||||   || ||||  |||||||| |||| ||||||| |||||||||  ||||| | | | ||||||||| |||||||||||||    
T  22716524 atttgttatttcttt---tacataaccagaacttatgtag-ctaagaggcacactttt--attcattaataatattcgagacttttctctcaatt 22716612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 22988793 - 22988605
Alignment:
Q  29 gttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttattttggcccacgg 126  Q
    ||||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||  |||||||||||| | |||||||||||||  |||||| |    
T  22988793 gttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccacag 22988694  T
Q  127 gtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
     ||||||||||||||   || ||||  |||||||| |||| ||||||| |||||||||  ||||| | | | ||||||||| |||||||||||||    
T  22988693 atttgttatttcttt---tacataaccagaacttatgtag-ctaagaggcacactttt--attcattaataatattcgagacttttctctcaatt 22988605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 13085433 - 13085227
Alignment:
Q  17 tgatgtaggagggt---tttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattt 111  Q
    ||||||||||||||   ||| ||||||||||  ||||||||  | |||||||| | | ||||||| ||||||||||  ||||||||||| |||||| |||    
T  13085433 tgatgtaggagggtgttttttttagtaattttatagtattttat-tttagccacatcttagtaatattctagaactttctattattatttcgttttgttt 13085335  T
Q  112 tattttggcccacgggtttgttatttctttccgtatataaggagaac-ttacgtagcctaagagacacactttttgattcaatcaaattattcgagattt 210  Q
    ||||| ||| |||   |||||||||| |||   ||| |||  ||||| ||| | ||||||||||||||  ||||| ||||||| ||||||||||||||||    
T  13085334 tatttcggctcacaaatttgttatttattttgctatttaaacagaacattatgcagcctaagagacac--ttttttattcaataaaattattcgagattt 13085237  T
Q  211 tctctcaatt 220  Q
    ||||||||||    
T  13085236 tctctcaatt 13085227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 13086312 - 13086270
Alignment:
Q  178 cactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  13086312 cactttttaattcaataaaattattcgagattttctctcaatt 13086270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 7634160 - 7634208
Alignment:
Q  267 actgcgtcagttggtatcagagcaggtttctc-tgttcttttcctaaca 314  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  7634160 actgcgtcagttggtaacagagtaggtttctcttgttcttttcctaaca 7634208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 54700606 - 54700575
Alignment:
Q  267 actgcgtcagttggtatcagagcaggtttctc 298  Q
    ||||||||||||||||||||||||||||||||    
T  54700606 actgcgtcagttggtatcagagcaggtttctc 54700575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 22691327 - 22691391
Alignment:
Q  285 agagcaggtttctc-tgttcttttcctaaca-gatcaaccatgggagatcaaccgatgacgaaag 347  Q
    |||||||||||||| ||||||||||||||   ||||| ||||||||||||||| | |||||||||    
T  22691327 agagcaggtttctcctgttcttttcctaaagtgatcagccatgggagatcaactggtgacgaaag 22691391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 30051954 - 30052157
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||| ||  ||||||||||  |||||||| ||  |||||||||   |||| |||||||||||||  |||||||||||  ||||| ||||||    
T  30051954 tgatgtaggagggcttccttagtaattttatagtatttttt--ttagccaaattttagtgattttctagaactttctattattattttgttttgttttat 30052051  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    ||||||| ||||||||||||||||||||  |||||||| | |||||| | ||| ||||||||||||||||| ||||| | | | ||||||||||||||||    
T  30052052 tttggcctacgggtttgttatttctttcactatataagcaaaacttatgcagcttaagagacacacttttttattcattaataatattcgagattttctc 30052151  T
Q  215 tcaatt 220  Q
    ||||||    
T  30052152 tcaatt 30052157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 30049667 - 30049870
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||||||||||| ||  ||||||||||  |||||||| ||  |||||||||   |||| |||||||||||||  |||||||||||  ||||| ||||||    
T  30049667 tgatgtaggagggcttccttagtaattttatagtatttttt--ttagccaaattttagtgattttctagaactttctattattattttgttttgttttat 30049764  T
Q  115 tttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctc 214  Q
    ||||||| ||||||||||||||||||||  |||||||| | ||||||   ||| ||||||||||||||||| ||||| | | | ||||||||||||||||    
T  30049765 tttggcctacgggtttgttatttctttcactatataagcaaaacttattcagcttaagagacacacttttttattcattaataatattcgagattttctc 30049864  T
Q  215 tcaatt 220  Q
    ||||||    
T  30049865 tcaatt 30049870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 3535845 - 3535988
Alignment:
Q  77 attttctagaact--ctattattattacgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagag 174  Q
    |||||||||||||  |||||||||||  ||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||||||||    
T  3535845 attttctagaactttctattattattttgttttgttttattttggcccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagag 3535944  T
Q  175 acacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
     |||||||||  ||||| | | | ||||||||||||||||||||||    
T  3535945 gcacactttt--attcattaataatattcgagattttctctcaatt 3535988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 3542056 - 3542199
Alignment:
Q  77 attttctagaact--ctattattattacgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagag 174  Q
    |||||||||||||  |||||||||||  ||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||||||||    
T  3542056 attttctagaactttctattattattttgttttgttttattttggcccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagag 3542155  T
Q  175 acacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
     |||||||||  ||||| | | | ||||||||||||||||||||||    
T  3542156 gcacactttt--attcattaataatattcgagattttctctcaatt 3542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 29341131 - 29340941
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaactctattattattacgttttattttattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||| |  |||||            ||||||    
T  29341131 tgatgtaggagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaact-ttctatta------------ttattt 29341045  T
Q  117 tggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctct 215  Q
     |||||||||||||||||||||  ||  |||||||| |||||||| | ||||||||| | ||||||||| ||||| | | | ||||||||| ||||||||    
T  29341044 cggcccacgggtttgttatttcaatcactatataagcagaacttatgcagcctaagacaaacacttttt-attcattaataatattcgagacttttctct 29340946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 11194416 - 11194541
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaac--tctattattattacgttttattttat 114  Q
    ||||||||||| ||||| |||||||||||||||||||| |  |||||||||| | |||||||||||||||||  |||| |||||||  ||||| ||||||    
T  11194416 tgatgtaggagagttttcttagtaatttagtagtattt-tattttagccaaatcttagtaattttctagaactttctagtattattttgttttgttttat 11194514  T
Q  115 tttggcccacgggtttgttatttcttt 141  Q
    || |||| |||||||| ||||||||||    
T  11194515 ttcggcctacgggtttattatttcttt 11194541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 11190252 - 11190453
Alignment:
Q  19 atgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttattt 116  Q
    |||||| |||||||| ||| ||||||| ||||||||  | ||||| |||| |  |||||||||||||||||  ||||||||||   ||||| ||||||||    
T  11190252 atgtagaagggttttcttaataatttaatagtattttat-tttagtcaaacctaagtaattttctagaactttctattattatattgttttgttttattt 11190350  T
Q  117 tggcccacgggtttgttatttctttccgtatataaggagaac-ttacgtagcctaagagacacactttttgattcaatcaaattattcgagattttctct 215  Q
     || | ||| |||||||||||||||   ||| |||  ||||| ||| ||||| ||| ||  ||||||||||||||||| |||||||||||||||||||||    
T  11190351 cggtctacgagtttgttatttcttttgctatttaaacagaacattatgtagcttaaaag--acactttttgattcaataaaattattcgagattttctct 11190448  T
Q  216 caatt 220  Q
    |||||    
T  11190449 caatt 11190453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 18718240 - 18718139
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaaca-gatcaaccatgggagat 331  Q
    ||||||||||||||||| | |||   |||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  18718240 taggtttagcgcttgct-agcctacacttctgtactgcgtccgttggtatcagagcaggtttctcctgttcttttcctaacatgatcagccatgggagat 18718142  T
Q  332 caa 334  Q
    |||    
T  18718141 caa 18718139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 18726883 - 18727003
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaact--ctattattattacgttttattttat 114  Q
    ||||| ||||||||||| ||||||||||  |||| |||  | |||||||||| | |||| |||||||||||||  ||||||||||| |||||| ||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttat-tttagccaaatcttagtcattttctagaactttctattattatttcgtttt-ttttat 18726980  T
Q  115 tttggcccacgggtttgttattt 137  Q
    || ||||||||||||||||||||    
T  18726981 ttcggcccacgggtttgttattt 18727003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 11190516 - 11190620
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac-agatcaaccatgggagat 331  Q
    ||||||||| | ||||| |||| ||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||  ||||| |||| ||||||    
T  11190516 taggtttagtgtttgct-aacccttgcttccgtattgcttcagttggtatcagagcaggtttctcctgttcgtttcctaacgtgatcagccataggagat 11190614  T
Q  332 caaccg 337  Q
    ||||||    
T  11190615 caaccg 11190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 24443073 - 24443000
Alignment:
Q  275 agttggtatcagagcaggtttctct-gttcttttcctaaca-gatcaaccatgggagatcaaccgatgacgaaa 346  Q
    |||||||||||||||| |||||||| ||||||||||||||  ||||| ||||||| ||||||||||||||||||    
T  24443073 agttggtatcagagcatgtttctcttgttcttttcctaacgtgatcagccatgggcgatcaaccgatgacgaaa 24443000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 8048982 - 8048898
Alignment:
Q  259 gcttccgtactgcgtcagttggtatcagagca-ggtttctc-tgttcttttcctaacagatcaaccatgggagatcaaccgatga 341  Q
    ||||| ||| || ||||||||||||||||||| |||||||| ||||||||||||||| ||| | ||||||||||||||| |||||    
T  8048982 gcttctgtattgggtcagttggtatcagagcatggtttctcctgttcttttcctaacggattagccatgggagatcaactgatga 8048898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 18203234 - 18203319
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctagaa--ctctattattatta 101  Q
    ||||||||||||||||  | ||||||||  ||||||||||||||||| |||| | ||||||||||||||||  ||||||||||||||    
T  18203234 tgatgtaggagggtttc-tcagtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattattatta 18203319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 30049964 - 30050019
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagc 289  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||    
T  30049964 taggtttagcgcttgctaacccttcgcttccgtactgcgtcagttggcatcagagc 30050019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 3536082 - 3536144
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttc 296  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||  |||||||||||||||    
T  3536082 taggtttagcgcttgctaaccctacgcttccgtactgcgtcagttgacatcagagcaggtttc 3536144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22910596 - 22910637
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttatta 58  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  22910596 tgatgtaggagggttttcttagtaatttattagtatttatta 22910637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 26571062 - 26571104
Alignment:
Q  178 cactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    ||||| || ||||||| ||||||||||||||||||||||||||    
T  26571062 cacttattcattcaataaaattattcgagattttctctcaatt 26571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 22889053 - 22889090
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtattt 54  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  22889053 tgatgtaggagggttttcttagtaatttattagtattt 22889090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 26570975 - 26571039
Alignment:
Q  79 tttctagaactctat--tattattacgttttattttattttggcccacgggtttgttatttcttt 141  Q
    ||||||||||| |||  |||| || |||||| |||||||| |||||||| |||||||||||||||    
T  26570975 tttctagaactttatcatattttttcgttttgttttatttcggcccacgagtttgttatttcttt 26571039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 3542293 - 3542337
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagtt 278  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||    
T  3542293 taggtttagcgcttgctaaccctacgcttccgtactgcgtcagtt 3542337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 3565596 - 3565691
Alignment:
Q  123 acgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattcaatcaaattattcgaga-ttttctctcaatt 220  Q
    |||||||||||||||| ||  |||| |||  |||||||| |||||| ||||| |||   |||| ||||||| ||| ||||||||| |||||||||||||    
T  3565596 acgggtttgttatttcatttagtatttaaacagaacttatgtagccaaagaggcac---ttttcattcaataaaaatattcgagacttttctctcaatt 3565691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 8050161 - 8050125
Alignment:
Q  25 gagggttttattagtaatttagtagtatttattattt 61  Q
    |||| |||| |||||||||||||||||||||||||||    
T  8050161 gaggtttttcttagtaatttagtagtatttattattt 8050125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 46989 - 46839
Alignment:
Q  72 tagtaattttctagaact--ctattattattacgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcct 169  Q
    |||| |||||||||||||  |||||||||||  ||||| ||||||||||||| ||||||||||||||||||||  |||||||| | ||||||   ||| |    
T  46989 tagtgattttctagaactttctattattattttgttttgttttattttggcctacgggtttgttatttctttcactatataagcaaaacttatccagctt 46890  T
Q  170 aagagacacactttttgattcaatcaaattattcgagattttctctcaatt 220  Q
    |||||||||||||||| ||||| | | | ||||||||||||||||||||||    
T  46889 aagagacacacttttttattcattaataatattcgagattttctctcaatt 46839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 45526 - 45397
Alignment:
Q  91 tattattattacgttttattttattttggcccacgggtttgttatttctttccgtatataaggagaacttacgtagcctaagagacacactttttgattc 190  Q
    ||||||||||  ||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||| | |||||||||| || || |||| ||||    
T  45526 tattattattttgttttattttattttggcccaggggtttattatttctttcactatataaggagaacttatgcagcctaagaggcaaacatttttattc 45427  T
Q  191 aatcaaattattcgagattttctctcaatt 220  Q
    | | | | ||||||||||||||||||||||    
T  45426 attaataatattcgagattttctctcaatt 45397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 46774 - 46713
Alignment:
Q  234 taggtttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggttt 295  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||| |||||||| |||||    
T  46774 taggtttagcgcttgctcaccctacgcttccgtactgcgtcagttggcatcagagccggttt 46713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 11605 - 11521
Alignment:
Q  259 gcttccgtactgcgtcagttggtatcagagca-ggtttctc-tgttcttttcctaacagatcaaccatgggagatcaaccgatga 341  Q
    ||||| ||| || ||||||||||||||||||| |||||||| ||||||||||||||| ||| | ||||||||||||||| |||||    
T  11605 gcttctgtattgggtcagttggtatcagagcatggtttctcctgttcttttcctaacggattagccatgggagatcaactgatga 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 16125 - 16196
Alignment:
Q  267 actgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaa-cagatcaaccatgggagatcaacc 336  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||   ||||| ||||| ||||||||||    
T  16125 actgcgtcagttggtatcagagcaggtttctccagttcttttcctaatgtgatcagccatgagagatcaacc 16196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 14928 - 14973
Alignment:
Q  269 tgcgtcagttggtatcagagcaggtttct-ctgttcttttcctaac 313  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||    
T  14928 tgcgtcagttggtatcagagcaggtttctcccgttcttttcctaac 14973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 15084 - 15015
Alignment:
Q  270 gcgtcagttggtatcagagcaggtttc-tctgttcttttcctaac-agatcaaccatgggagatcaaccg 337  Q
    |||||||||| |||||||||||||||| | ||||||||| |||||  ||||| |||||||||||||||||    
T  15084 gcgtcagttgatatcagagcaggtttcttgtgttcttttactaacttgatcagccatgggagatcaaccg 15015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 10449 - 10490
Alignment:
Q  17 tgatgtaggagggttttattagtaatttagtagtatttatta 58  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  10449 tgatgtaggagggttttcttagtaatttattagtatttatta 10490  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 8354 - 8290
Alignment:
Q  154 agaacttacgtagcctaagagacacactttttgattcaatcaaattattcgagat-tttctctcaatt 220  Q
    ||||||| |||||||||||||  ||||||||| ||||||||||||| |||||||| ||| ||||||||    
T  8354 agaactttcgtagcctaagag--acactttttcattcaatcaaatt-ttcgagatctttttctcaatt 8290  T

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