View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_2 (Length: 794)
Name: NF6649_low_2
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 275 - 783
Target Start/End: Original strand, 42700566 - 42701074
Alignment:
| Q |
275 |
gctcaagaaaaatcagtgacagatagaaagggtcttttgttcagcttcttggaaattttcactaattgaacagagagaattcaatgtttgacttgccatg |
374 |
Q |
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| T |
42700566 |
gctcaagaaaaatcagtgacagatagaaagggtcttttgttcagcttcttggaaattttcactaattgaacagagagaattcaatgtttgacttgccatg |
42700665 |
T |
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| Q |
375 |
tttttctttttgacttgctatgtgattccaattttgaaggaaaagttgactaatggtcaactgtacagtgaatctaaaagaatgcttaatttcttcaaga |
474 |
Q |
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| T |
42700666 |
tttttctttttgacttgctatgtgattccaattttgaaggaaaagttgactaatggtcaactgcacagtgaatctaaaagaatgcttaatttcttcaaga |
42700765 |
T |
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| Q |
475 |
cctgaaaataaactgtccttttatttatatgtattttatgatgtatgagcatgagagttgttaattttagcactgattctttgattcttcaatgcagaat |
574 |
Q |
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| T |
42700766 |
cctgaaaataaactgtccttttatttatatgtattttatgatgtatgagcatgagagttgttaattttagcactgattctttgattcttcaatgcagaat |
42700865 |
T |
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| Q |
575 |
acagataatgtgagaagcggtacgacgcttcattattgattctacaatgcaggcatcagagcagcatagaagttcaagtatgtactatcaaccattgcag |
674 |
Q |
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| T |
42700866 |
acagataatgtgagacgcggtacgacgcttcattattgattctacaatgcaggcatcagagcagcatagaagttcaagtatgtactatcaaccattgcag |
42700965 |
T |
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| Q |
675 |
caaatcgaagcctattgcttgccacaatatcgaaatctaaatcatcagctatacaacaatgatggaggccaggcaactcaattctcggctccaacttctt |
774 |
Q |
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| T |
42700966 |
caaatcgaagcctattgcttgccacaatatcgaaatctaaatcatcagctatacaacaatgatggaggccaagcaactcaattctcggctccaacttctt |
42701065 |
T |
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| Q |
775 |
ctgaccttt |
783 |
Q |
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| T |
42701066 |
ctgaccttt |
42701074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 42700311 - 42700509
Alignment:
| Q |
20 |
ttataaacattatattttatggaatatttgattgaggaattttccatatacagatgtaaattcttcatttctttgaaataattaattttatataaatgaa |
119 |
Q |
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| T |
42700311 |
ttataaacattatattttgtggaatatttgattgaggaattttccatatacagatgtaaattcttcatttctttgaaataattaattttatataaatgaa |
42700410 |
T |
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| Q |
120 |
atctagacatctggttcaatatcatttacatttttgtgtcttatcttttgaattttgtttaatggagactatttatgtttggattattccttctccttc |
218 |
Q |
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| T |
42700411 |
atctagacatctggttcaatatcatgtacatttttgtgtcttatcttttgaattttgtttaatggagactatttatgtttggattattccttctccttc |
42700509 |
T |
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