View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_22 (Length: 267)
Name: NF6649_low_22
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 50325333 - 50325580
Alignment:
| Q |
1 |
atgcctccagaaatatctggagccaagaaaaatcgttttcatggtcttagaggtatactaaaattacnnnnnnnntaaactatgctgaaccagtaaattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
50325333 |
atgcctccagaaatatctggagccaagaaaaatcgttttcatggtcttagaggtatactaaaattacaaaaaaaattaactatgctgaaccagtaaattc |
50325432 |
T |
|
| Q |
101 |
agagcatagatatttaatatgaatctagatatgagannnnnnnnnnnaccaatcttaaaatgagttaaaatagtaacaacattttctttcgattttttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50325433 |
agagcatagatatttaatatgaatctagatatgagatttttttttttaccaatcttaaaatgagttaaaatagtaacaacattttctttcgattttttgc |
50325532 |
T |
|
| Q |
201 |
acatacaggagagaccagcagtaaatccattgaggcaatggtgagttc |
248 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50325533 |
acatacaggagagaccagcagtaaatctattgaggcaatggtgagttc |
50325580 |
T |
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