View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6649_low_24 (Length: 260)

Name: NF6649_low_24
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6649_low_24
NF6649_low_24
[»] chr2 (2 HSPs)
chr2 (21-118)||(10790393-10790490)
chr2 (177-260)||(10790549-10790632)
[»] chr7 (2 HSPs)
chr7 (21-118)||(35347517-35347614)
chr7 (177-260)||(35347375-35347458)
[»] chr6 (2 HSPs)
chr6 (21-118)||(2274575-2274672)
chr6 (177-260)||(2274433-2274516)
[»] chr5 (3 HSPs)
chr5 (21-118)||(39346065-39346162)
chr5 (177-260)||(39345923-39346006)
chr5 (64-117)||(30469649-30469702)
[»] chr1 (4 HSPs)
chr1 (21-118)||(4011909-4012006)
chr1 (177-260)||(4011767-4011850)
chr1 (177-260)||(25875453-25875536)
chr1 (25-118)||(25875596-25875689)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 10790393 - 10790490
Alignment:
Q  21 gcagttccacttgttaccacaatcatctatcaaaaccaaaactgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 118  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10790393 gcagttccacttgttaccacaatcatctatcaaaaccaaagccgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 10790490  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 10790549 - 10790632
Alignment:
Q  177 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 260  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  10790549 gggagttgacagacggttattccaaactgacccaacccaacatataccatggtgatccaagcactgaaacgtatatcatagaaa 10790632  T

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Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 35347614 - 35347517
Alignment:
Q  21 gcagttccacttgttaccacaatcatctatcaaaaccaaaactgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 118  Q
    ||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35347614 gcagttccacttgttgccacaatcgtctatcaaaaccaaagccgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 35347517  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 35347458 - 35347375
Alignment:
Q  177 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35347458 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacggatatcatagaaa 35347375  T

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Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 2274672 - 2274575
Alignment:
Q  21 gcagttccacttgttaccacaatcatctatcaaaaccaaaactgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 118  Q
    ||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274672 gcagttccacttgttgccacaatcgtctatcaaaaccaaagccgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 2274575  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 2274516 - 2274433
Alignment:
Q  177 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2274516 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacggatatcatagaaa 2274433  T

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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 39346162 - 39346065
Alignment:
Q  21 gcagttccacttgttaccacaatcatctatcaaaaccaaaactgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 118  Q
    ||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39346162 gcagttccacttgttgccacaatcgtctatcaaaaccaaagccgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 39346065  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 39346006 - 39345923
Alignment:
Q  177 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39346006 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacggatatcatagaaa 39345923  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 30469702 - 30469649
Alignment:
Q  64 gtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctat 117  Q
    |||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||    
T  30469702 gtggtcctcttatccaatgcaaattcacaaaaaccattgtagaacaacttctat 30469649  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 4012006 - 4011909
Alignment:
Q  21 gcagttccacttgttaccacaatcatctatcaaaaccaaaactgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 118  Q
    ||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4012006 gcagttccacttgttgccacaatcgtctatcaaaaccaaagccgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 4011909  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 4011850 - 4011767
Alignment:
Q  177 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4011850 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacggatatcatagaaa 4011767  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 25875536 - 25875453
Alignment:
Q  177 gggagttgacagatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25875536 gggagttgacatatggttattccaaactgacccaacccaacatataccatagtgatccaagcaccgaaacgtatatcatagaaa 25875453  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 25875689 - 25875596
Alignment:
Q  25 ttccacttgttaccacaatcatctatcaaaaccaaaactgtggtccttttatccagtgcagattcacaaaaaccattgtagaccaacttctatc 118  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25875689 ttccacttgttatcacaatcatctatcaaaaccaaagccgtggtccttttatccagtgcaaattcacaaaaaccattgtagaccaacttctatc 25875596  T

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