View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_29 (Length: 247)
Name: NF6649_low_29
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 6194252 - 6194462
Alignment:
| Q |
37 |
ctagctccagaggctaatacatcatcttctacaaaatcaagcattgttcgactattctcgtggataatgagtgtttcttccagttgttgggattacacag |
136 |
Q |
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| T |
6194252 |
ctagctccaatggctaatacatcatcttctacaaaatcaagcattgttcgactattctcgtagataatgagtgtttcttccagttgttgggattacacag |
6194351 |
T |
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| Q |
137 |
cgcctcatgtttggcctgattcctcccatcttgcggcattttttcgttctccttattcatgtacgctacattatctcataatatgcctctatgaagatat |
236 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6194352 |
cgcctcatgtttggcctgattcctcccatcttgcagcattttttcgttctccttattcatgtacgctacattgtctcataatatgcctctatgaagatat |
6194451 |
T |
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| Q |
237 |
tcgcttgagtt |
247 |
Q |
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| T |
6194452 |
tcgcttgagtt |
6194462 |
T |
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