View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6649_low_3 (Length: 703)
Name: NF6649_low_3
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_3 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 691; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 9 - 703
Target Start/End: Complemental strand, 1430772 - 1430078
Alignment:
| Q |
9 |
agcataggtgatgcttatttatcattggcgcgctatgatgaagcgattttttcttatcagaaagctttaactgttttcaaatcaaccaaaggagagaatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430772 |
agcataggtgatgcttatttatcattggcgcgctatgatgaagcgattttttcttatcagaaagctttaactgttttcaaatcaaccaaaggagagaatc |
1430673 |
T |
|
| Q |
109 |
atccaacagttgcttctgtttttgtaaggttagcggatctatacaacaaaataggaaagttcaaggactcaaaaacttattgtgaaaacgcgcttcggat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430672 |
atccaacagttgcttctgtttttgtaaggttagcggatctatacaacaaaataggaaagttcaaggactcaaaaacttattgtgaaaacgcgcttcggat |
1430573 |
T |
|
| Q |
209 |
tttcgggaagaaaaaacctggaatctctctggaagagattgctaatggattgatagacgttgctgcaatttatcaatccatgaatgatttggaaaagggt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430572 |
tttcgggaagaaaaaacctggaatctctctggaagagattgctaatggattgatagatgttgctgcaatttatcaatccatgaatgatttggaaaagggt |
1430473 |
T |
|
| Q |
309 |
ttgaagttactcaaaaaagcattgaagatatacaacaatgttcctggtcaacacagtactattgctggaattgaagcacaaatgggagttatgtattata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430472 |
ttgaagttactcaaaaaagcattgaagatatacaacaatgttcctggtcaacacagtactattgctggaattgaagcacaaatgggagttatgtattata |
1430373 |
T |
|
| Q |
409 |
tgttaggaaactattctgattcttataacatctttaaaagtgctgtcacgaaatttcgtgctagcggagagaaaaaatcggctttgttcggaattgcatt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430372 |
tgttaggaaactattctgattcttataacatctttaaaagtgctgtcacgaaatttcgtgctagcggagagaaaaaatcggctttgttcggaattgcatt |
1430273 |
T |
|
| Q |
509 |
gaaccaaatgggacttgcttgtgtccaaaggtatgctataaatgaagctgcagatttgtttgaagaggctaggactattttggaaaaagagtatggtcct |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430272 |
gaaccaaatgggacttgcttgtgtccaaaggtatgctataaatgaagctgcagatttgtttgaagaggctaggactattttggaaaaagagtatggtcct |
1430173 |
T |
|
| Q |
609 |
tatcatccagataccttaggagtttatagcaatcttgcaggaacctacgacgcaatgggaaggtaacatcgtcattgacccttaaatctcgttac |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1430172 |
tatcatccagataccttaggagtttatagcaatcttgcaggaacctacgacgcaatgggaaggtaacatcgtcattgacccttaaatctcgttac |
1430078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 1226914 - 1227056
Alignment:
| Q |
57 |
ttttcttatcagaaagctttaactgttttcaaatcaaccaaaggagagaatcatccaacagttgcttctgtttttgtaaggttagcggatctatacaaca |
156 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
1226914 |
ttttcttatcagaaagtttcaactgctttcaaatcaaccaaaggagagaatcatccaacagttgcttcagtttttgtaaggttagctgatttatacaaca |
1227013 |
T |
|
| Q |
157 |
aaataggaaagttcaaggactcaaaaacttattgtgaaaacgc |
199 |
Q |
| |
|
||||| | ||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
1227014 |
aaataagtaagttcagggaatcaaaaacttattgttaaaacgc |
1227056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 1248023 - 1248086
Alignment:
| Q |
358 |
aacacagtactattgctggaattgaagcacaaatgggagttatgtattatatgttaggaaacta |
421 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1248023 |
aacaaagtactattggtggaattgaagcacaaatgggagttatgtattatatgttagaaaacta |
1248086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 1242331 - 1242382
Alignment:
| Q |
403 |
attatatgttaggaaactattctgattcttataacatctttaaaagtgctgt |
454 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
1242331 |
attatatgttaggaaactattctgaattttataacatctttaaaagttctgt |
1242382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 1247969 - 1248027
Alignment:
| Q |
291 |
aatgatttggaaaagggtttga---agttactcaaaaaagcattgaagatatacaacaa |
346 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1247969 |
aatgatttggaaaagggtttgatgaagttactcaaaaaagcattgaaaatatataacaa |
1248027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 1242271 - 1242311
Alignment:
| Q |
321 |
aaaaaagcattgaagatatacaacaatgttcctggtcaaca |
361 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
1242271 |
aaaaaagcattgaaaatatgtaacaatgttcctggtcaaca |
1242311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 523 - 703
Target Start/End: Complemental strand, 8064282 - 8064102
Alignment:
| Q |
523 |
ttgcttgtgtccaaaggtatgctataaatgaagctgcagatttgtttgaagaggctaggactattttggaaaaagagtatggtccttatcatccagatac |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8064282 |
ttgcttgtgtccaaaggtatgctataaatgaagctgaggatttgttcaaagaggctaggacgatattggaaaaagagtatggtccttatcatccagatac |
8064183 |
T |
|
| Q |
623 |
cttaggagtttatagcaatcttgcaggaacctacgacgcaatgggaaggtaacatcgtcattgacccttaaatctcgttac |
703 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8064182 |
cttaggagtttattgcaatcttgtcagaacctatgatgcaatgggaaggtaacatcgtcattgacccttaaatctccttac |
8064102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University