View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6649_low_30 (Length: 247)
Name: NF6649_low_30
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49271803 - 49271572
Alignment:
| Q |
1 |
tggtttgtgagcactggtggtacagctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271803 |
tggtttgtgagcactggtggtgcagctggggatcttgttagcaagttcaagattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagt |
49271704 |
T |
|
| Q |
101 |
tctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271703 |
tctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaacc |
49271604 |
T |
|
| Q |
201 |
ttactatgttagatttcagaaggcttccactt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49271603 |
ttactatgttagatttcagaaggcttccactt |
49271572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49277720 - 49277489
Alignment:
| Q |
1 |
tggtttgtgagcactggtggtacagctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagt |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||| | ||| ||||| |||| || ||||||||||||| || ||||||||||||||||| ||||||||| || |
|
|
| T |
49277720 |
tggtttgtgagcaccggtggttttcctgggaacctttttagccagtttaagattgagaggcttgagggagaacatgcttatgagatttatagctttctgt |
49277621 |
T |
|
| Q |
101 |
tctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaacc |
200 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
49277620 |
actgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaagaacc |
49277521 |
T |
|
| Q |
201 |
ttactatgttagatttcagaaggcttccactt |
232 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
49277520 |
ttattatgttagatttcagaaggcttccactt |
49277489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49269355 - 49269121
Alignment:
| Q |
1 |
tggtttgtgagcactggtggtacagctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagt |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||| |||||||| ||||||| ||||| ||| || || | || |||| |||||||| |
|
|
| T |
49269355 |
tggtttttgagcactggtggtgtagctggggatgttgttagtaagttcaagattgagaagcttgaaggagacactgggattccaatctatatctttaagt |
49269256 |
T |
|
| Q |
101 |
tctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattga---aga |
197 |
Q |
| |
|
||||||| ||||||||||||| | | |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
49269255 |
tctgtccttctgttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggtaatgatcttga |
49269156 |
T |
|
| Q |
198 |
accttactatgttagatttcagaaggcttccactt |
232 |
Q |
| |
|
|||||| |||||||| ||||||| || |||||||| |
|
|
| T |
49269155 |
accttattatgttaggtttcagagggtttccactt |
49269121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University