View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_36 (Length: 234)
Name: NF6649_low_36
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 2533897 - 2534100
Alignment:
| Q |
25 |
gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
2533897 |
gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcgcacaattatggggacaaccagagtcggtaaggatgagttc |
2533996 |
T |
|
| Q |
125 |
ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatattcttc |
224 |
Q |
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||| || ||||||||||||||||||| | | ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
2533997 |
ttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatcttcttg |
2534096 |
T |
|
| Q |
225 |
gaca |
228 |
Q |
| |
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|||| |
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|
| T |
2534097 |
gaca |
2534100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 5035207 - 5035403
Alignment:
| Q |
26 |
agttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttct |
125 |
Q |
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||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |
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| T |
5035207 |
agttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggattagttct |
5035306 |
T |
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| Q |
126 |
tcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatattct |
222 |
Q |
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||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||| |||| |
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| T |
5035307 |
tcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaacttttcatcttct |
5035403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 2525339 - 2525542
Alignment:
| Q |
25 |
gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |
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| T |
2525339 |
gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcacacagttactacgacaaccagtgtcggtaaggatgagttc |
2525438 |
T |
|
| Q |
125 |
ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatattcttc |
224 |
Q |
| |
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|||||| |||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2525439 |
ttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagtgagagatgtcaaatttttcattttcttg |
2525538 |
T |
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| Q |
225 |
gaca |
228 |
Q |
| |
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|||| |
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|
| T |
2525539 |
gaca |
2525542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 2490716 - 2490904
Alignment:
| Q |
29 |
taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg |
128 |
Q |
| |
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|||||||||| ||||||||||||||||| ||| ||| |||||||| | |||| || |||| |||||| ||| ||||||| ||||||||||| ||| |
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| T |
2490716 |
taaagcaatcttgcggagtttgggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcgtcg |
2490815 |
T |
|
| Q |
129 |
agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcat |
217 |
Q |
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|| ||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
2490816 |
agtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcat |
2490904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 2518821 - 2519009
Alignment:
| Q |
29 |
taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg |
128 |
Q |
| |
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|||||||||| |||||||||| |||||||||| |||| || |||| ||||||| | ||| || || | || || ||||||||||||||||||| | |
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| T |
2518821 |
taaagcaatcttgcggagtttaggaagcgccaagaattgaaaatcaatatctatcaccaaatcattggtataaatggtatcggtaaggatgagttctttg |
2518920 |
T |
|
| Q |
129 |
agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcat |
217 |
Q |
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|| ||||||||||||||||||||| | |||||||||||||| |||| || |||||| ||||||||||||| |||||||||||||||| |
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| T |
2518921 |
agtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcat |
2519009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 2621540 - 2621432
Alignment:
| Q |
112 |
taaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatt |
211 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| || | |||||||||||| ||| | ||| | ||||||||||||||||||||||| |
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| T |
2621540 |
taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatt |
2621441 |
T |
|
| Q |
212 |
tttcatatt |
220 |
Q |
| |
|
||||||||| |
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| T |
2621440 |
tttcatatt |
2621432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 2467212 - 2467321
Alignment:
| Q |
111 |
gtaaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgat---aaatctcatttgataacaagtgagagatgtca |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| | ||||| ||||||| ||| ||| ||| | ||||||||||| ||||||| |
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| T |
2467212 |
gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca |
2467311 |
T |
|
| Q |
208 |
aatttttcat |
217 |
Q |
| |
|
|||||||||| |
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|
| T |
2467312 |
aatttttcat |
2467321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 2547221 - 2547320
Alignment:
| Q |
118 |
tgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcat |
217 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | | |||||||||| ||||||| | |||| ||||| ||||||| |||||||||||||| |
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|
| T |
2547221 |
tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat |
2547320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
| Q |
117 |
atgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt |
171 |
Q |
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|||||||||||||| ||||||||||||||||||||| | ||||||| |||||| |
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|
| T |
5106686 |
atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt |
5106632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 2477156 - 2477201
Alignment:
| Q |
29 |
taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatca |
74 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2477156 |
taaagcaatcttgcggagtttgggaagcgccaacaattgatcatca |
2477201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
| Q |
119 |
gagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt |
171 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | ||||||| |||||| |
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|
| T |
2368033 |
gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt |
2367981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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