View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_38 (Length: 225)
Name: NF6649_low_38
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 34023186 - 34023373
Alignment:
| Q |
25 |
ggcagcgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaa |
124 |
Q |
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| T |
34023186 |
ggcagtgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgtaaaatggaattatagatagagttgtgaaagttgcaagtaagctgacaa |
34023285 |
T |
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| Q |
125 |
cgagttaaataatgataatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
212 |
Q |
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| T |
34023286 |
cgagttaaataatgataatattagtggacagattcatgtattcaatgaataagtctatcactttagttcattaattagagttcatctc |
34023373 |
T |
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Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 34030437 - 34030625
Alignment:
| Q |
25 |
ggcagcgaaaatgtgcactaaaacc-aaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgaca |
123 |
Q |
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||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
34030437 |
ggcagtgaaaatgtgcactaaaaactaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaaataggctgaca |
34030536 |
T |
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| Q |
124 |
acgagttaaataatgataatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
212 |
Q |
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| T |
34030537 |
atgagttaagtaaagataatattagtggacagattcatgtattcaatgaatatgtctctcactttagttcattgattggagttcatctc |
34030625 |
T |
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