View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_39 (Length: 223)
Name: NF6649_low_39
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_39 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 34023788 - 34023579
Alignment:
| Q |
14 |
tgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatttatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatc |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023788 |
tgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatatatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatc |
34023689 |
T |
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| Q |
114 |
acctgataagctttgtatttgatcaattccttcagtctatctacaatgaacagataaccatctgagtcaaaataacaaagatctccggtcttcagccatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34023688 |
acctgataagctttgtatttgatcaattccttcagtctatctacaatgaacagataaccatctgagtcaaaataacaaagatctccagtcttcagccatc |
34023589 |
T |
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| Q |
214 |
cctctgaatc |
223 |
Q |
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|||||||||| |
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| T |
34023588 |
cctctgaatc |
34023579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 34031029 - 34030815
Alignment:
| Q |
14 |
tgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaattta-----tagcaaatgatatcttcaaaaatatatgtccacttcacaat |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
34031029 |
tgtgctctaattcagctgggggaacctgaaaaatagcaaggaaatgtaaagataggcgatagcaaatggtatcttcaaaaatatctgtccacttcacaat |
34030930 |
T |
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| Q |
109 |
gcatcacctgataagctttgtatttgatcaattccttcagtctatctacaatgaacagataaccatctgagtcaaaataacaaagatctccggtcttcag |
208 |
Q |
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| T |
34030929 |
gcatcacctgataagctttgtatttgatcaattccttcagtctatctacaatgaacagataaccatctgagtcaaaataacaaagatctccggtcttcag |
34030830 |
T |
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| Q |
209 |
ccatccctctgaatc |
223 |
Q |
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||||||||||||||| |
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| T |
34030829 |
ccatccctctgaatc |
34030815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 34016791 - 34016928
Alignment:
| Q |
14 |
tgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatttatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatc |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
34016791 |
tgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaat--atagaaaatgatatcttcaaaaatatttgtcc-cttcacaatgcatc |
34016887 |
T |
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| Q |
114 |
acctgataagctttgtatttgatcaattccttcagtctatc |
154 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| |
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| T |
34016888 |
gcctgataagctttgtattagatcaattcctttagtctatc |
34016928 |
T |
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