View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_4 (Length: 562)
Name: NF6649_low_4
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Complemental strand, 17110693 - 17110288
Alignment:
| Q |
14 |
atatcattcatgtttaataacaaaacacattacctttatattgtacacgttttgacgatgcaagaaaccaagttccagaatcctgatagctccataccca |
113 |
Q |
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| T |
17110693 |
atatcattcatgtttaataacaaaacacattacctttatattgtacactttttgacaatgcaagaaaccaagttccagaatcctgatagctccataccca |
17110594 |
T |
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| Q |
114 |
tccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaaacttttgtgttacgataagtagagatcagcaaacacagatcagatag |
213 |
Q |
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| T |
17110593 |
tccctagcaatacgagtgaaattcaaggttaaatgaatatttgaaaatattaaactt--gtgttacgataagtagagatcagcaaacacagatcagatag |
17110496 |
T |
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| Q |
214 |
tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaactaattaagctcggccaattgtgt |
313 |
Q |
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| T |
17110495 |
tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgacgtttggtaactaattaagctcggccaattgcgt |
17110396 |
T |
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| Q |
314 |
gtacgtctccaactgtattgatttatattattacccacttgggatttacagggtacaaatttgtatttaaacactgcatttcagattacaacataaatcc |
413 |
Q |
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| T |
17110395 |
gtacgtctccaactgtattgatttatattattacccacttaggatttacagggtacaaatttgtatttaaacactgcatttcagattacaacataaatcc |
17110296 |
T |
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| Q |
414 |
cactgatc |
421 |
Q |
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|||||||| |
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| T |
17110295 |
cactgatc |
17110288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 420 - 543
Target Start/End: Complemental strand, 17110266 - 17110143
Alignment:
| Q |
420 |
tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta |
519 |
Q |
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| T |
17110266 |
tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta |
17110167 |
T |
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| Q |
520 |
cctgagtaattgttgggcactatg |
543 |
Q |
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| T |
17110166 |
cctgagtaattgttgggcactatg |
17110143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 17126230 - 17126147
Alignment:
| Q |
192 |
tcagcaaacacagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacaca |
276 |
Q |
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| T |
17126230 |
tcagcaaatacagatcagatagtgttagaacatcaaccctagttcaaaagagtaaaaat-tcaaaaaacgcaaacaatgaacaca |
17126147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 16980212 - 16980058
Alignment:
| Q |
14 |
atatcattcatgtttaataacaaaacacattacctttatattgtacacgttttg--acgatgcaagaaaccaagttccagaatcctgatagctccatacc |
111 |
Q |
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|||||||||||| ||||||| |||||| |||| |||||||| ||| | |||| | ||| |||||| |||||| ||||||| |||||||| ||||| |
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| T |
16980212 |
atatcattcatgattaataataaaacaaattatctttatatagtatatttttttttagtatgtaagaaattaagttctagaatccagatagctcaatacc |
16980113 |
T |
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| Q |
112 |
catccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaa |
166 |
Q |
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| T |
16980112 |
catcactagctgtacaaatgaaattcaaagttaaatcaatatttgaaaatattaa |
16980058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 17032084 - 17031930
Alignment:
| Q |
14 |
atatcattcatgtttaataacaaaacacattacctttatattgtacacgttttg--acgatgcaagaaaccaagttccagaatcctgatagctccatacc |
111 |
Q |
| |
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|||||||||||| ||||||| |||||| |||| |||||||| ||| | |||| | ||| |||||| |||||| ||||||| |||||||| ||||| |
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| T |
17032084 |
atatcattcatgattaataataaaacaaattatctttatatagtatatttttttttagtatgtaagaaattaagttctagaatccagatagctcaatacc |
17031985 |
T |
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| Q |
112 |
catccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaa |
166 |
Q |
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|||| ||||| ||| | ||| |||||| ||||||| |||||||||||||||||| |
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| T |
17031984 |
catcactagctgtacaaatgaaattcaaagttaaatcaatatttgaaaatattaa |
17031930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 17050352 - 17050269
Alignment:
| Q |
83 |
aagttccagaatcctgatagctccatacccatccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaa |
166 |
Q |
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|||||| ||||||| |||||||| ||||||||| ||||| ||| | ||| |||||| ||||||| |||||||||||||||||| |
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| T |
17050352 |
aagttctagaatccagatagctcaatacccatcactagctgtacaaatgaaattcaaagttaaatcaatatttgaaaatattaa |
17050269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 35052265 - 35052192
Alignment:
| Q |
214 |
tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaa |
289 |
Q |
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| T |
35052265 |
tgttagaacagcaa-tccggttcaaaagaataaagatacgaaaaa-cgcaaacaatgaacacacgttgtttggtaa |
35052192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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