View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6649_low_6 (Length: 541)

Name: NF6649_low_6
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6649_low_6
NF6649_low_6
[»] chr4 (6 HSPs)
chr4 (217-523)||(1500027-1500333)
chr4 (13-221)||(1503674-1503882)
chr4 (257-427)||(1362131-1362301)
chr4 (303-350)||(33469899-33469946)
chr4 (40-117)||(29016584-29016661)
chr4 (307-392)||(32498269-32498354)
[»] chr8 (3 HSPs)
chr8 (257-457)||(14040665-14040865)
chr8 (64-164)||(11625903-11626003)
chr8 (64-164)||(9182270-9182370)
[»] chr5 (3 HSPs)
chr5 (279-518)||(19963069-19963307)
chr5 (46-149)||(29291329-29291432)
chr5 (307-392)||(23149992-23150077)
[»] chr2 (3 HSPs)
chr2 (257-402)||(2927804-2927949)
chr2 (46-149)||(24465717-24465820)
chr2 (40-101)||(8072641-8072702)
[»] chr1 (3 HSPs)
chr1 (259-386)||(2901579-2901706)
chr1 (257-401)||(10532977-10533122)
chr1 (260-368)||(52843172-52843280)
[»] chr3 (3 HSPs)
chr3 (337-384)||(4755729-4755776)
chr3 (67-164)||(6864159-6864256)
chr3 (79-143)||(36917492-36917556)
[»] chr6 (2 HSPs)
chr6 (62-164)||(10160494-10160596)
chr6 (40-101)||(21950876-21950937)
[»] chr7 (3 HSPs)
chr7 (307-392)||(12352009-12352094)
chr7 (293-346)||(22331045-22331098)
chr7 (307-392)||(41146477-41146562)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 217 - 523
Target Start/End: Complemental strand, 1500333 - 1500027
Alignment:
217 gacaagatgacaatccgcaaagactatggtgactctggagagcaaggatggaagcttcccataaactcttcctttattcttaccagagttctcaaagata 316  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
1500333 gacaagatgacaatccgcaaagactatggtgactatggagagcaagtatggaagcttcccataaactcttcctttattcttaccagagttctcaaagata 1500234  T
317 aatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatggaggagtatatggagcaccattccactgttaacacttgg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1500233 aatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatggaggagtatatggagcaccattccactgttaacacttgg 1500134  T
417 ataaaggtggagaattggagacggaaaaagtatcaatgtatggtctgatctgtggattagaactcgtaacaatatgaagcctacaacaccaccactttat 516  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
1500133 atataggtggagaattggagacggaaaaagtatcaatgtatggtctgatctgtggattagaactcgtaacaatatgaagcctacaacaacaccactgtat 1500034  T
517 caccacc 523  Q
    |||||||    
1500033 caccacc 1500027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 1503882 - 1503674
Alignment:
13 aatattcagaattggagccaaagatcactttctagagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgatt 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1503882 aatattcagaattggagccaaagatcactttttagagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgatt 1503783  T
113 ttcttcttcctacctcttttggagaagaaattgaaaggatgctgaactctttttactcaggttcaaagaaaaatggagcgttcggtatcaattggctcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1503782 ttcttcttcctacctcttttggagaagaaattgaaaggatgctgaactctttttactcaggttcaaagaaaaatggagcgttcggtatcaattggctcaa 1503683  T
213 atgggacaa 221  Q
    |||||||||    
1503682 atgggacaa 1503674  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 257 - 427
Target Start/End: Original strand, 1362131 - 1362301
Alignment:
257 agcaaggatggaagcttcccataaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttgg 356  Q
    |||||||||||||||| | |||| ||||||||| | | || |||| ||||||||||| ||||||||| |||||||  || |||||||  ||||   ||||    
1362131 agcaaggatggaagctcctcatagactcttcctctctcctcaccaaagttctcaaagctaaatatttccctagaagcgggtttttgggcgccactattgg 1362230  T
357 taatagtccaagctatacatggaggagtatatggagcaccattccactgttaacacttggataaaggtgga 427  Q
    | |||||||||| |  || ||||||||||| |||||||| |||||| ||||| | ||||| || |||||||    
1362231 tcatagtccaagtttcacgtggaggagtatttggagcactattccaatgttatctcttggttataggtgga 1362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 33469899 - 33469946
Alignment:
303 agttctcaaagataaatattttcctagaaatggatttttggatgccaa 350  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||    
33469899 agttctcaaagttaaatattttcttagaagtggatttttggatgccaa 33469946  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 29016584 - 29016661
Alignment:
40 ctttctagagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttctt 117  Q
    |||||| | ||||||||||||||| | || ||||| ||||| |||| ||||||||| ||||| ||| ||| |||||||    
29016584 ctttctcgtgcaggtaaagaggttcttattaaatcggttgcgcaagctattccttcatattgtatgggtgcttttctt 29016661  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 32498269 - 32498354
Alignment:
307 ctcaaagataaatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatggaggagtatatggag 392  Q
    ||||||| ||||||||||||  |||  |  |||||||||||||| || ||| ||| |||||| || |||||||||||| |||||||    
32498269 ctcaaagctaaatattttccccgaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggag 32498354  T

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Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 257 - 457
Target Start/End: Original strand, 14040665 - 14040865
Alignment:
257 agcaaggatggaagcttcccataaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttgg 356  Q
    ||||||||| ||||||||   |||||||||||| | || |||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||  |    
14040665 agcaaggattgaagcttcttctaaactcttcctctgtttttaccaaagttctcaaagctaaatactttcctagaattggatttttggatgccaaactatg 14040764  T
357 taatagtccaagctatacatggaggagtatatggagcaccattccactgttaacacttggataaaggtggagaattggagacggaaaaagtatcaatgta 456  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
14040765 tcatagtccaagctatacatggaggagtatatggagcaccattccacttttaacacttggatataggtggagaattggagacgaaaaaagtatcaatgta 14040864  T
457 t 457  Q
    |    
14040865 t 14040865  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 11625903 - 11626003
Alignment:
64 ttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattgaaaggatgctgaactctt 163  Q
    ||||||||||| || |||||||  |||||||||||||||||| | |  |||||  ||||||||||  || | ||||| || ||||||||| |||||||||    
11625903 ttaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattcctacctccctttgcgaagagatagaaaggatgatgaactctt 11626002  T
164 t 164  Q
    |    
11626003 t 11626003  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 9182370 - 9182270
Alignment:
64 ttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattgaaaggatgctgaactctt 163  Q
    ||||||||||| || |||||||  |||||||||||||||||| | |  |||||  ||||||||||  || | || || || ||||||||| |||||||||    
9182370 ttaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattcctacctccctttgcgatgagatagaaaggatgatgaactctt 9182271  T
164 t 164  Q
    |    
9182270 t 9182270  T

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Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 279 - 518
Target Start/End: Original strand, 19963069 - 19963307
Alignment:
279 aaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatgg 378  Q
    |||||| |||| ||||||||| ||||||||||||  |||||||||||| | ||||||||| |||||| |  |||||||  |||||||||| |  ||||||    
19963069 aaactcgtcctctattcttactagagttctcaaaactaaatattttcc-ataaatggattcttggatactgaacttggacatagtccaagtttcacatgg 19963167  T
379 aggagtatatggagcaccattccactgttaacacttggataaaggtggagaattggagacggaaaaagtatcaatgtatggtctgatctgtggattagaa 478  Q
    | |||||||| ||||||||||||| ||||||| | | | || ||||||| || |||||| ||||  |  || ||||||||  ||||||| ||||||||||    
19963168 atgagtatattgagcaccattccaatgttaactcctagttataggtggaaaaatggagatggaagtaaaattaatgtatgaactgatctatggattagaa 19963267  T
479 ctcgtaacaatatgaagcctacaacaccaccactttatca 518  Q
    ||||  | ||||||||||||||||||||||| ||| ||||    
19963268 ctcgccaaaatatgaagcctacaacaccaccccttcatca 19963307  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 29291329 - 29291432
Alignment:
46 agagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattg 145  Q
    |||||||||||||||||  | |||||||| ||||| ||||  |||||||| ||||| ||| | | ||||||  |||| ||||||||  | ||||||||||    
29291329 agagcaggtaaagaggtgctcatcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattg 29291428  T
146 aaag 149  Q
    ||||    
29291429 aaag 29291432  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 23149992 - 23150077
Alignment:
307 ctcaaagataaatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatggaggagtatatggag 392  Q
    ||||||| ||||||||||||  |||  |  |||||||||||||| || ||| ||| |||||| || |||||||||||| |||||||    
23149992 ctcaaagctaaatattttccccgaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggag 23150077  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 402
Target Start/End: Complemental strand, 2927949 - 2927804
Alignment:
257 agcaaggatggaagcttcccataaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttgg 356  Q
    ||||| |||||||||| | || |||||||  || | |||||||  |||||||||||| || ||||||||||| ||| || ||||||||  ||||  ||||    
2927949 agcaaagatggaagctcctcacaaactctgactctcttcttactcgagttctcaaagttagatattttcctataaacggttttttggacaccaatattgg 2927850  T
357 taatagtccaagctatacatggaggagtatatggagcaccattcca 402  Q
    | |||||||||| |  |||||||||||||| |||||||| ||||||    
2927849 tcatagtccaagtttcacatggaggagtatttggagcactattcca 2927804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 24465717 - 24465820
Alignment:
46 agagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattg 145  Q
    |||||||||||||||||  | |||||||| ||||| ||||  |||||||| ||||| ||| | | ||||||  |||| ||||||||  | ||||||||||    
24465717 agagcaggtaaagaggtgctcatcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattg 24465816  T
146 aaag 149  Q
    ||||    
24465817 aaag 24465820  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 8072702 - 8072641
Alignment:
40 ctttctagagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattg 101  Q
    ||||||||||| |||||||||||  | |||||||| ||||| ||||  ||||||||||||||    
8072702 ctttctagagctggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcttattg 8072641  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 386
Target Start/End: Original strand, 2901579 - 2901706
Alignment:
259 caaggatggaagcttcccataaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttggta 358  Q
    ||||||||||||||   || ||||||||||||| | || || ||||||||||||||||||||||| |||||||   | |||||||  |||||  |||||     
2901579 caaggatggaagctcttcacaaactcttcctttctcctcactagagttctcaaagataaatatttccctagaagcagctttttgggcgccaatattggtc 2901678  T
359 atagtccaagctatacatggaggagtat 386  Q
    ||||| |||| |  ||||||||||||||    
2901679 atagtacaagtttcacatggaggagtat 2901706  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 401
Target Start/End: Complemental strand, 10533122 - 10532977
Alignment:
257 agcaaggatggaagct-tcccataaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttg 355  Q
    |||||||||| ||||| | ||| |||||| |||||| | || || ||||||||||||| ||||||||| |||||||   ||||||||   |||||  |||    
10533122 agcaaggatgaaagctcttccacaaactcctcctttctcctcactagagttctcaaagctaaatatttccctagaagaagatttttgagcgccaatattg 10533023  T
356 gtaatagtccaagctatacatggaggagtatatggagcaccattcc 401  Q
    ||  ||||||||| |  |||||||||||||| |||||||| |||||    
10533022 gtcgtagtccaagtttcacatggaggagtatctggagcactattcc 10532977  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 52843280 - 52843172
Alignment:
260 aaggatggaagcttcccataaactcttcctttattcttaccagagttctcaaagataaatattttcctagaaatggatttttggatgccaaacttggtaa 359  Q
    ||||||||||||| | || ||||||||||| | | || |||| ||||||||||| ||||||||| |||||||  || |||||||  ||||   ||||| |    
52843280 aaggatggaagctcctcacaaactcttcctctctcctcaccaaagttctcaaagctaaatatttccctagaagcgggtttttgggcgccactattggtca 52843181  T
360 tagtccaag 368  Q
    |||||||||    
52843180 tagtccaag 52843172  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 4755776 - 4755729
Alignment:
337 tttttggatgccaaacttggtaatagtccaagctatacatggaggagt 384  Q
    |||||||||||||| |||||  ||| ||||||||||||||||||||||    
4755776 tttttggatgccaaccttggctataatccaagctatacatggaggagt 4755729  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 6864159 - 6864256
Alignment:
67 atcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattgaaaggatgctgaactcttt 164  Q
    ||||||||||||| ||||| |||||| || ||||| ||| | |||||||| || || ||||| ||  | ||||| |||||||||||| |||| |||||    
6864159 atcaaatcagttgtccaagctattccctcctattgtatgggggattttctcctccccacctccttatgcgaagagattgaaaggatgatgaattcttt 6864256  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 36917556 - 36917492
Alignment:
79 gcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaat 143  Q
    ||||||||||||||||| ||||||||| | | ||| |||||||||||  || |||| ||||||||    
36917556 gcccaagttattccttcatattgcatgggagctttccttcttcctactactcttggcgaagaaat 36917492  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 10160596 - 10160494
Alignment:
62 ttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattgaaaggatgctgaactc 161  Q
    ||||||||||||| || |||||||  |||||||||||||||||| | |  |||||  ||||||||||  || | || || || ||||||||| |||||||    
10160596 ttttaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattcctacctccctttgcgatgagatagaaaggatgatgaactc 10160497  T
162 ttt 164  Q
    |||    
10160496 ttt 10160494  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 21950876 - 21950937
Alignment:
40 ctttctagagcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattg 101  Q
    ||||||||||| |||||||||||  | |||||||| ||||| ||||  ||||||||||||||    
21950876 ctttctagagctggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcttattg 21950937  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 12352094 - 12352009
Alignment:
307 ctcaaagataaatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatggaggagtatatggag 392  Q
    ||||||| ||||||||||||  |||  |  |||||||||||||| || ||| ||| |||||| || |||||||||||| |||||||    
12352094 ctcaaagctaaatattttccccgaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggag 12352009  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 22331098 - 22331045
Alignment:
293 ttcttaccagagttctcaaagataaatattttcctagaaatggatttttggatg 346  Q
    ||||||| | || ||||||||  ||||||||||||| |||||||||||||||||    
22331098 ttcttactaaaggtctcaaagcaaaatattttcctaaaaatggatttttggatg 22331045  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 41146477 - 41146562
Alignment:
307 ctcaaagataaatattttcctagaaatggatttttggatgccaaacttggtaatagtccaagctatacatggaggagtatatggag 392  Q
    ||||||| ||||||||||||  |||  |  |||||||||||||| || ||| ||| |||||| || |||||||||||| |||||||    
41146477 ctcaaagctaaatattttccccgaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggag 41146562  T

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