View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6649_low_8 (Length: 520)

Name: NF6649_low_8
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6649_low_8
NF6649_low_8
[»] chr2 (3 HSPs)
chr2 (16-501)||(11330393-11330866)
chr2 (361-493)||(7178043-7178175)
chr2 (210-289)||(37423059-37423137)
[»] scaffold0288 (1 HSPs)
scaffold0288 (171-289)||(9860-9979)
[»] chr1 (4 HSPs)
chr1 (171-275)||(5362808-5362908)
chr1 (208-291)||(35409005-35409088)
chr1 (171-275)||(52319052-52319157)
chr1 (236-288)||(3523174-3523226)
[»] chr5 (8 HSPs)
chr5 (207-285)||(41658759-41658837)
chr5 (207-297)||(41685853-41685942)
chr5 (170-289)||(37097872-37097987)
chr5 (205-277)||(864428-864501)
chr5 (251-288)||(17896035-17896072)
chr5 (189-262)||(38646660-38646732)
chr5 (242-294)||(29694191-29694243)
chr5 (261-297)||(32497212-32497248)
[»] chr4 (4 HSPs)
chr4 (240-290)||(6861263-6861313)
chr4 (179-231)||(33911970-33912022)
chr4 (208-287)||(33827431-33827509)
chr4 (236-289)||(20619746-20619799)
[»] scaffold0301 (1 HSPs)
scaffold0301 (171-260)||(5879-5967)
[»] chr8 (1 HSPs)
chr8 (179-231)||(35908605-35908657)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 11330393 - 11330866
Alignment:
Q  16 atgttgagcaggttagcctagatattaccctaagtagagtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagtgaaattggacat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330393 atgttgagcaggttagcctagatattaccctaagtagagtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagtgaaattggacat 11330492  T
Q  116 tcatgcagcaacttcaatcaataagtataacttttttctataggcaaatgttagttgttacttgttagtaaattgttagagggaagggggaaatgttagt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  11330493 tcatgcagcaacttcaatcaataagtataacttttttctataggcaaatgttagttgttacttgttagtaaatttttagagggaaggggg---------- 11330582  T
Q  216 ttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgggactataacccaatttaactg 315  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11330583 --ccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccaaccgagctacctatgtgggactataacccaatttaactg 11330680  T
Q  316 aagctattagcctaaagnnnnnnnattttcctctactgtactcatttaatatccgaattcttttgttgcaggtccgaaacattgctttgggaattgtatc 415  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11330681 aagctattagcctaaagtttttttattttcctctactgtactcatttaatatccgaattcttttgttgcaggtccggaacattgctttgggaattgtatc 11330780  T
Q  416 tcgtagggttaattggaaacagccgactgtgatggagacaattgatagtaagtaaatattgctagctcttctacttgttttcaggc 501  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330781 tcgcaggtttaattggaaacagccgactgtgatggagacaattgatagtaagtaaatattgctagctcttctacttgttttcaggc 11330866  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 361 - 493
Target Start/End: Complemental strand, 7178175 - 7178043
Alignment:
Q  361 ttaatatccgaattcttttgttgcaggtccgaaacattgctttgggaattgtatctcgtagggttaattggaaacagccgactgtgatggagacaattga 460  Q
    |||||||||  ||| |||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||| | |||||| ||||||||||||||    
T  7178175 ttaatatcctgattattttgttgcaggtccggaacattgcattgggaattgtatcccgtagagtaaattggaaacaactgactgttatggagacaattga 7178076  T
Q  461 tagtaagtaaatattgctagctcttctacttgt 493  Q
    |||||||||||||||| ||||| ||| ||||||    
T  7178075 tagtaagtaaatattgttagcttttccacttgt 7178043  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 37423059 - 37423137
Alignment:
Q  210 gttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 289  Q
    ||||||||||||| ||||||| ||| || | ||||||| | |||||||||  |||||||||||||| || ||||||||||    
T  37423059 gttagtttccggg-atcgaacccgggactttcttcttataactccttcaatatcccttagctcaccaactgagctaccta 37423137  T

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Target: scaffold0288 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 9979 - 9860
Alignment:
Q  171 tgttacttgttagtaaattgtta-gagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 269  Q
    ||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||  || ||| ||| ||||||||||||||||||||||||| ||||| ||    
T  9979 tgttagttgttagtaaattgttaagagaggagggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaatctccttcaacatccctgag 9880  T
Q  270 ctcaccgaccgagctaccta 289  Q
    |||||| || ||||||||||    
T  9879 ctcaccaactgagctaccta 9860  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 5362908 - 5362808
Alignment:
Q  171 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagc 270  Q
    ||||| |||||||||  ||||| ||||||||||| |||||||||||||| || || |||| ||| ||||||||||||||||||||||||| |||||||||    
T  5362908 tgttagttgttagta--ttgttggagggaagggg-aaatgttagtttccagg-attgaacacgggacctccttcttaaatctccttcaacctcccttagc 5362813  T
Q  271 tcacc 275  Q
    |||||    
T  5362812 tcacc 5362808  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 35409005 - 35409088
Alignment:
Q  208 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatg 291  Q
    ||||||||||| || |||  ||||||||||||||| ||| || ||||||||||| ||||||| ||||  ||||| ||| |||||    
T  35409005 atgttagtttctggagatgaaactcggaacctcctcctttaaactccttcaacgacccttagttcactaaccgaactatctatg 35409088  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 52319157 - 52319052
Alignment:
Q  171 tgttacttgttagtaaattgttagag-ggaagggggaaatgttagtttccggggatcgaactcgga-acctccttcttaaatctccttcaacgtccctta 268  Q
    ||||| ||||||| ||||||||| || || |||| |||||||||||||| | | |||||| || || ||||||  |||||||||||||||||| ||||||    
T  52319157 tgttagttgttagcaaattgttaaagtgggagggagaaatgttagtttctgagaatcgaa-tctgagacctccggcttaaatctccttcaacgcccctta 52319059  T
Q  269 gctcacc 275  Q
    | |||||    
T  52319058 gttcacc 52319052  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 3523174 - 3523226
Alignment:
Q  236 acctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacct 288  Q
    ||||||| |||||| ||||||||  |||||||| |||||| ||||||||||||    
T  3523174 acctcctgcttaaaactccttcattgtcccttatctcaccaaccgagctacct 3523226  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 41658759 - 41658837
Alignment:
Q  207 aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagcta 285  Q
    |||||||||||||||| ||| ||  ||| | |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  41658759 aatgttagtttccgggaatcaaatccgggaactccttcttaaacctccttcgacgtcccttagctcaccaaccgagcta 41658837  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 41685853 - 41685942
Alignment:
Q  207 aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgggac 297  Q
    |||||||||||||||| || |||| | | |||||||||| ||||||||||  ||||||||||  |||||||| ||||||||||||||||||    
T  41685853 aatgttagtttccggg-atggaacccaggacctccttctcaaatctcctttgacgtcccttatatcaccgactgagctacctatgtgggac 41685942  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 289
Target Start/End: Complemental strand, 37097987 - 37097872
Alignment:
Q  170 ttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 269  Q
    |||||| ||||| |||||||| ||||  | || |||||||||||||| | | |||| |||| |||||||| |||   ||||||||||||| |||||||||    
T  37097987 ttgttagttgttcgtaaattggtagataggagagggaaatgttagtt-ctgaggatagaacccggaacctactt---aaatctccttcaatgtcccttag 37097892  T
Q  270 ctcaccgaccgagctaccta 289  Q
    |||||| |||||||||||||    
T  37097891 ctcaccaaccgagctaccta 37097872  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 864501 - 864428
Alignment:
Q  205 gaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccc-ttagctcaccga 277  Q
    |||||||||||||||||||||| ||| ||| | ||||| ||| || |||||| | |||||| ||||||||||||    
T  864501 gaaatgttagtttccggggatcaaacccgggatctcctccttcaaactccttgatcgtccctttagctcaccga 864428  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 17896072 - 17896035
Alignment:
Q  251 ctccttcaacgtcccttagctcaccgaccgagctacct 288  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  17896072 ctccttcaatgtcccttagctcaccaaccgagctacct 17896035  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 38646732 - 38646660
Alignment:
Q  189 tgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgt 262  Q
    |||||||||  |||| ||||||||||||| || |||||||||||  ||| ||| || |||||||||||||||||    
T  38646732 tgttagaggagagggagaaatgttagttttcgaggatcgaactcaaaacatccatc-taaatctccttcaacgt 38646660  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 29694243 - 29694191
Alignment:
Q  242 ttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgg 294  Q
    ||||||||||||||||||| | |||| | | ||| ||||||||||||||||||    
T  29694243 ttcttaaatctccttcaacattcctttggttaccaaccgagctacctatgtgg 29694191  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 32497212 - 32497248
Alignment:
Q  261 gtcccttagctcaccgaccgagctacctatgtgggac 297  Q
    ||||||||||||||  |||||||||||||||||||||    
T  32497212 gtcccttagctcactaaccgagctacctatgtgggac 32497248  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 6861313 - 6861263
Alignment:
Q  240 ccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctat 290  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||    
T  6861313 ccttcttaaatctctttcaatgtcccttagctcaccaaccgaactacctat 6861263  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 33912022 - 33911970
Alignment:
Q  179 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 231  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  33912022 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 33911970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 33827509 - 33827431
Alignment:
Q  208 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacc 287  Q
    ||||||||||||||| ||||||| ||  ||||||| |||||| |||||||||||| ||||| | |||| | |||||||||    
T  33827509 atgttagtttccggg-atcgaacccgagacctcctccttaaagctccttcaacgttccttaacgcaccaatcgagctacc 33827431  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 20619799 - 20619746
Alignment:
Q  236 acctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 289  Q
    ||||||||||| || || || ||||||||||||||||||| |||||||| ||||    
T  20619799 acctccttcttcaaactgctacaacgtcccttagctcaccaaccgagctgccta 20619746  T

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Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 5967 - 5879
Alignment:
Q  171 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaac 260  Q
    ||||| |||||||||||||||| |||||||  | ||||| |||||||||| |||||||||    || ||||||||||||| |||||||||    
T  5967 tgttagttgttagtaaattgttggagggaatagagaaat-ttagtttccgtggatcgaaccgaaaatctccttcttaaatttccttcaac 5879  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 35908657 - 35908605
Alignment:
Q  179 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 231  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  35908657 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 35908605  T

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