View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6649_low_9 (Length: 441)
Name: NF6649_low_9
Description: NF6649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6649_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 130 - 431
Target Start/End: Complemental strand, 7446360 - 7446059
Alignment:
| Q |
130 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
229 |
Q |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
230 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
|
| Q |
330 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7446061 |
T |
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| Q |
430 |
tg |
431 |
Q |
| |
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|| |
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| T |
7446060 |
tg |
7446059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 130 - 431
Target Start/End: Complemental strand, 7461304 - 7461003
Alignment:
| Q |
130 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
229 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
|
| Q |
230 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
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| Q |
330 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7461005 |
T |
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| Q |
430 |
tg |
431 |
Q |
| |
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|| |
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| T |
7461004 |
tg |
7461003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7446486 - 7446419
Alignment:
| Q |
1 |
aaaacactatagtaatataatattgttggaattaaaaaatttatgtctagttataatccaatcaactg |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
7446486 |
aaaacactatagtaatataatattgttggaattaaaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 7461474 - 7461445
Alignment:
| Q |
1 |
aaaacactatagtaatataatattgttgga |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7461474 |
aaaacactatagtaatataatattgttgga |
7461445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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