View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6650_high_2 (Length: 390)
Name: NF6650_high_2
Description: NF6650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6650_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 96 - 379
Target Start/End: Complemental strand, 51725749 - 51725466
Alignment:
| Q |
96 |
tctacaattatatttgtttatgaccaaaatcgagtgactatgggaagacttgaattccgtatagcaaaccctagatgtttgccttgttacttccagttgt |
195 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51725749 |
tctaaaattatatttgcttatgaccaaaatcgagtgacaatgggaagacttgaattccgtatagcaaaccctaaatgtttgccttgttacttccagttgt |
51725650 |
T |
|
| Q |
196 |
gtaggtgtgaaagggtacacaccgcactttggtcaatgctaattaacacttgatgacaacaaatccagcaaaggatcagaatgaatttattattgttgaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51725649 |
gtaggtgtgaaagggtacacaccgcactttggtcaatgctaattaacacttgatgacaacaaagccagcaaaggatcagaatgaatttattattgttgaa |
51725550 |
T |
|
| Q |
296 |
aaacagaatgggttttttagatactagtagtacgtaacagtaaatgacaacgttcagattttaagcatatcgatctttattcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51725549 |
aaacagaatgggttttttagatactagtagtacgtaacagtaaatgacaacattcagattttaagcatatcgatctttattcat |
51725466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 51725854 - 51725771
Alignment:
| Q |
18 |
agggaaatcagatatgattattcatgtatgttcgcaagagaaatataaatcacttaaacacacttataaaatgttaattctaca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51725854 |
agggaaatcagatatgattattcatgtatgttggcaagagaaatataaatcacttaaacacacttataaaatgttaattctaca |
51725771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University