View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6650_low_1 (Length: 461)
Name: NF6650_low_1
Description: NF6650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6650_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 33593631 - 33593288
Alignment:
| Q |
24 |
tgtccaatccaatctgatcttcttaacggaatatcaccaattcatcaccaaactatttcaacaaaaacatcaaagattggtggttagaaaagaaaaagaa |
123 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33593631 |
tgtccaatccaatctgatattcttaacgtaatatcaccaattcatcaccaaaccatttcaacaaaatcatcaaagattggtggttagaaaagaaaaagaa |
33593532 |
T |
|
| Q |
124 |
tcgtggcactttgtggtcaatacaagtatatactttgaagcgttgactatgcggtaggacnnnnnnnnnnnngtgtgctcactctgtcacttatttcaca |
223 |
Q |
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| T |
33593531 |
tcgtggcactttgtggtcaatacaactatatactttgaagcgttgactatgcggtaggacttttttctttttgtgtgctcactctgtcacttatttcaca |
33593432 |
T |
|
| Q |
224 |
taattcgtgtgcattaattagtcaggcccatcatcccccactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaa |
323 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33593431 |
taattggtgtgcattaattagtcaggcccatcatcccctactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaa |
33593332 |
T |
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| Q |
324 |
aacatgaaagggaaatgatttggagtttccctcttgcttgtttt |
367 |
Q |
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| T |
33593331 |
aacatgaaagggaaatgatttggagtttccctcttgtttgtttt |
33593288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 33600762 - 33600419
Alignment:
| Q |
24 |
tgtccaatccaatctgatcttcttaacggaatatcaccaattcatcaccaaactatttcaacaaaaacatcaaagattggtggttagaaaagaaaaagaa |
123 |
Q |
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| T |
33600762 |
tgtccaatccaatctgatattcttaacgtaatatcaccaattcatcaccaaaccatttcaacaaaatcatcaaagattggtggttagaaaagaaaaagaa |
33600663 |
T |
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| Q |
124 |
tcgtggcactttgtggtcaatacaagtatatactttgaagcgttgactatgcggtaggacnnnnnnnnnnnngtgtgctcactctgtcacttatttcaca |
223 |
Q |
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| T |
33600662 |
tcgtggcactttgtggtcaatacaactatatactttgaagcgttgactatgcggtaggacttttttctttttgtgtgctcactctgtcacttatttcaca |
33600563 |
T |
|
| Q |
224 |
taattcgtgtgcattaattagtcaggcccatcatcccccactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaa |
323 |
Q |
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| T |
33600562 |
taattggtgtgcattaattagtcaggcccatcatcccctactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaa |
33600463 |
T |
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| Q |
324 |
aacatgaaagggaaatgatttggagtttccctcttgcttgtttt |
367 |
Q |
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| T |
33600462 |
aacatgaaagggaaatgatttggagtttccctcttgtttgtttt |
33600419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 429
Target Start/End: Complemental strand, 33586192 - 33585975
Alignment:
| Q |
196 |
gtgtgctcactctgtcacttat-ttcacataattcgtgtgcattaattagtcaggcccatcatcccccactccccaacatttatgagaaaaaccagttgt |
294 |
Q |
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||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| |
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| T |
33586192 |
gtgtgctcactctgtcactcatattcacataattggtgtgcattaattagtcaagcccatcatcccccacctcccaacatttatgaaaaaaa-------- |
33586101 |
T |
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| Q |
295 |
gcttgactttatttttcgttgttttgcaaaacatgaaagggaaatgatttggagtttccctcttgcttgttttcgtgtctgattggtttggagtttgcaa |
394 |
Q |
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| T |
33586100 |
----aaaattatttttcgttgttttgcaaaacatgacagggaaatga-----aagctccctcttgtttgttttagtgcctgtttgatttggaatttgcaa |
33586010 |
T |
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| Q |
395 |
ccatagacgcaggtctgcgagatttccaaagcaaa |
429 |
Q |
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||| | | ||| |||||| ||||||||||||||| |
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| T |
33586009 |
ccacaaatgcatgtctgcaggatttccaaagcaaa |
33585975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 33593290 - 33593233
Alignment:
| Q |
388 |
tttgcaaccatagacgcaggtctgcgagatttccaaagcaaatttgccttaattttta |
445 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33593290 |
tttgcaaccacaaacgcaggtctgcgagatttccaaagcaaatttgacttaattttta |
33593233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 33600421 - 33600364
Alignment:
| Q |
388 |
tttgcaaccatagacgcaggtctgcgagatttccaaagcaaatttgccttaattttta |
445 |
Q |
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| T |
33600421 |
tttgcaaccacaaacgcaggtctgcgagatttccaaagcaaatttgacttaattttta |
33600364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 33586258 - 33586214
Alignment:
| Q |
74 |
aactatttcaacaaaaacatcaaagattggtggttagaaaagaaa |
118 |
Q |
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||||||| ||||||||||||||||||||| | ||||||||||||| |
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| T |
33586258 |
aactattacaacaaaaacatcaaagattgttagttagaaaagaaa |
33586214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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