View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6650_low_7 (Length: 243)
Name: NF6650_low_7
Description: NF6650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6650_low_7 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0243 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 19243503 - 19243281
Alignment:
| Q |
17 |
atgcaattccatattccattgaaagtcgtgtcatccaattccattgctgttagtgtatat-gcccattccaactattctattttgtgctgcacagttaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
19243503 |
atgcaattccatattccattgaaagtcgtgtcatccaattccattgtcgttagtgtatattgcccattccaattattctattttgtgctgcacagttaat |
19243404 |
T |
|
| Q |
116 |
tcaatccttaatcgtttgctgcttagcttgttggtctattttcattcgttggtttgctactgctaattcttgcattgtcgcagcacttattctttttatt |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19243403 |
tcaatccttaatcgtttgctgctt-----gttggtctattttcattctttggtttgctactgctaattcttgcattgtcgcagcacttattctttttatt |
19243309 |
T |
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| Q |
216 |
taaagtttccatcattaatcaagtgttc |
243 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
19243308 |
taaagtttccatcattaatcaagtgttc |
19243281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 39867504 - 39867725
Alignment:
| Q |
17 |
atgcaattccatattccattgaaagtcgtgtcatccaattccattgctgttagtgtatatgcccattccaactattctattttgtgctgcacagttaatt |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
39867504 |
atgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgtatatgcccattctaattattctattttgtgctgcacagttaatt |
39867603 |
T |
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| Q |
117 |
caatccttaatcgtttgctgcttagcttgttggtctattttcattcgttggtttgctactgctaattcttgcattgtcgcagcacttattctttttattt |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39867604 |
caatccttaatcgtttgct-----gcttgttggtctattttcattcgctggtttaccactgctaactcttgcattgtcgcagcacttattctttttattt |
39867698 |
T |
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| Q |
217 |
aaagtttccatcattaatcaagtgttc |
243 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
39867699 |
aaagtttccatcatgaatcaagtgttc |
39867725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 3335539 - 3335499
Alignment:
| Q |
169 |
ttgctactgctaattcttgcattgtcgcagcacttattctt |
209 |
Q |
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| T |
3335539 |
ttgctactgctaattcttgtattgtcgcagcacttattctt |
3335499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0243 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 21841 - 22062
Alignment:
| Q |
17 |
atgcaattccatattccattgaaagtcgtgtcatccaattccattgctgttagtgtatatgcccattccaactattctattttgtgctgcacagttaatt |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
21841 |
atgcaattccatattccattgaaagtcgtgccatccaattccattgtcgttagtgtatatgtccattccaattattctattttgtgctgcacagttaatt |
21940 |
T |
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| Q |
117 |
caatccttaatcgtttgctgcttagcttgttggtctattttcattcgttggtttgctactgctaattcttgcattgtcgcagcacttattctttttattt |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21941 |
caatccttaatcgtttgct-----gcttgttggtctattttcattcgttggtttgctactgctaattcttgcattgtcgcatcacttattctttttattt |
22035 |
T |
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| Q |
217 |
aaagtttccatcattaatcaagtgttc |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22036 |
aaagtttccatcattaatcaagtgttc |
22062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 22704991 - 22705215
Alignment:
| Q |
17 |
atgcaattccatattccattgaaagtcgtgtcatccaattccattgctgttagtgtatatg---cccattccaactattctattttgtgctgcacagtta |
113 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
22704991 |
atgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgtatatgatgcccattccaattattctattttgtgttgcacagtta |
22705090 |
T |
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| Q |
114 |
attcaatccttaatcgtttgctgcttagcttgttggtctattttcattcgttggtttgctactgctaattcttgcattgtcgcagcacttattcttttta |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22705091 |
attcaatccttaatcgtttgctgctt-----gttggtctattttcattcgttgatttgctactgctaattcttgcattgtcacagcacttattcttttta |
22705185 |
T |
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| Q |
214 |
tttaaagtttccatcattaatcaagtgttc |
243 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
22705186 |
tttaaagttttcatcattaatcaagtgttc |
22705215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 105755 - 105653
Alignment:
| Q |
141 |
gcttgttggtctattttcattcgttggtttgctactgctaattcttgcattgtcgcagcacttattctttttatttaaagtttccatcattaatcaagtg |
240 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105755 |
gcttgttggtcccttttcactcgttggtttactactgctaattcttgcattgtcgcagcacttattctttttatttaaagtttccatcattaatcaagtg |
105656 |
T |
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| Q |
241 |
ttc |
243 |
Q |
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||| |
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| T |
105655 |
ttc |
105653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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