View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6650_low_8 (Length: 239)
Name: NF6650_low_8
Description: NF6650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6650_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 11819167 - 11819058
Alignment:
| Q |
113 |
ataataagcaaatgaactagatagatagat----tcaattattcaaagatgaaaatacaacactgggtttggatgtgtgccattttatttgcaagctatt |
208 |
Q |
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| T |
11819167 |
ataataagcaaatgaactagatagatagatatattcaattattcaaagatggaaatacaatactgggtttggatgtgtgccattttatttgcaagctatt |
11819068 |
T |
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| Q |
209 |
tttgtgtgaa |
218 |
Q |
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| T |
11819067 |
tttgtgtgaa |
11819058 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 11819297 - 11819219
Alignment:
| Q |
14 |
caaaggcaatgctaatcaatgttgaaccatcccatcctcaccaactctgacacaacatctagggggagataaatgcaac |
92 |
Q |
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| T |
11819297 |
caaaggcaatgctaatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaac |
11819219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 11805335 - 11805250
Alignment:
| Q |
27 |
aatcaatgttgaaccatcccatcctcaccaactctgacacaacatctagggggagataaatgcaacaagcaaatgaactagatata |
112 |
Q |
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| T |
11805335 |
aatcaatggtgaaccatcccatcctcaccaactctgacacaagatctagggggagataaatgcaactcgcaaatgaactagatata |
11805250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 11805193 - 11805114
Alignment:
| Q |
134 |
tagatagattcaattattcaaagatgaaaatacaacactgggtttggatgtgtgccattttatttgcaagctatttttgt |
213 |
Q |
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| T |
11805193 |
tagatatatccaattattcaaagatggaaatagaatattgggtttggatgtgtgccattttgttggcaagctatttttgt |
11805114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 11820595 - 11820519
Alignment:
| Q |
148 |
tattcaaagatgaaaatacaacactgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaacatttt |
224 |
Q |
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|||||||||||| | |||||| |||||| |||||||||||||||| || ||||||||||||||||| || ||||| |
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| T |
11820595 |
tattcaaagatggatatacaattttgggttcggatgtgtgccattttgttggcaagctatttttgtgttaatatttt |
11820519 |
T |
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