View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6652_high_2 (Length: 212)

Name: NF6652_high_2
Description: NF6652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6652_high_2
NF6652_high_2
[»] chr6 (13 HSPs)
chr6 (18-190)||(2952075-2952247)
chr6 (18-189)||(2927303-2927474)
chr6 (18-194)||(2937598-2937774)
chr6 (18-189)||(2964652-2964823)
chr6 (18-177)||(3003548-3003707)
chr6 (18-197)||(2974142-2974321)
chr6 (18-171)||(2929470-2929623)
chr6 (18-171)||(2934760-2934913)
chr6 (18-194)||(2658749-2658931)
chr6 (18-184)||(2997137-2997303)
chr6 (18-193)||(2983002-2983180)
chr6 (28-171)||(2978408-2978550)
chr6 (65-118)||(2954555-2954608)
[»] chr7 (1 HSPs)
chr7 (18-170)||(3339187-3339339)
[»] scaffold0024 (3 HSPs)
scaffold0024 (18-194)||(35006-35182)
scaffold0024 (65-118)||(44742-44795)
scaffold0024 (126-171)||(45123-45168)
[»] chr3 (2 HSPs)
chr3 (20-167)||(49618589-49618735)
chr3 (18-171)||(49613597-49613750)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 2952247 - 2952075
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||||||||||||||| | ||| | |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2952247 caaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccgaaaacctcaagtcaagtaaacac 2952148  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatcc 190  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  2952147 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcc 2952075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 2927474 - 2927303
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    |||||||||||||||||| ||||||||||| |||| ||| | |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2927474 caaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 2927375  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatc 189  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  2927374 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatc 2927303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 2937774 - 2937598
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||| ||| ||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||     
T  2937774 caaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctcaagtcaagtaaacaa 2937675  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatccgttc 194  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  2937674 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttc 2937598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 2964823 - 2964652
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||| | | |||||||| |||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964823 caaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 2964724  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatc 189  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  2964723 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatc 2964652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 3003548 - 3003707
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003548 caaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 3003647  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggt 177  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  3003648 ttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggt 3003707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 2974321 - 2974142
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||| ||| |||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  2974321 caaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcatgtaaacat 2974222  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatccgttcatc 197  Q
    | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  |||||||    
T  2974221 tcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcatc 2974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 2929623 - 2929470
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    |||||||| |||||||| |||||||||||||||| ||||  |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2929623 caaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctgaaaaccttaagtcaagtaaacac 2929524  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgca 171  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2929523 ttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgca 2929470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 2934913 - 2934760
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||| |||||  || |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934913 caaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 2934814  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgca 171  Q
    ||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||    
T  2934813 ttacttttagtattcactttaaacctaactccagcttctaacaattcagttgca 2934760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 2658749 - 2658931
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccga------aaacctcaagtcaagt 111  Q
    ||||||||||||||| ||||| ||| |||| |||  ||||||||||||||||||||||||||||||||||||||| ||      ||||||||||||||||    
T  2658749 caaagcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagt 2658848  T
Q  112 aaacacttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatccgttc 194  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  2658849 aaacacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttc 2658931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 2997137 - 2997303
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    |||||||||||||||||||||||||| |||||||  ||| |||||  ||||   |||||||||||||||| |||||||||||||||||||||||||||||    
T  2997137 caaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctcaagtcaagtaaacac 2997236  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgta 184  Q
    ||  ||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||    
T  2997237 ttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgta 2997303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 2983180 - 2983002
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgc---atcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaa 114  Q
    |||||||| |||||||||||| ||| |||||||||    ||| | |||  ||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  2983180 caaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaacctcaagtcatataaa 2983081  T
Q  115 cacttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatccgtt 193  Q
    |||||| ||| ||| ||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  2983080 cacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccgtt 2983002  T

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Target: chr6; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
Q  28 atattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttattttcag 127  Q
    |||| |||||| ||| |||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  128 tgttcactttaaacctaactccagcttctaacaactcagttgca 171  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  2978450 tgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 2954608 - 2954555
Alignment:
Q  65 ttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacact 118  Q
    |||||||||||||| ||||||||| |   |||||||||||||||||||||||||    
T  2954608 ttaattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacact 2954555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 3339339 - 3339187
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3339339 caaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagccaagtaaacac 3339240  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgc 170  Q
    | | ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  3339239 tcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc 3339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 35006 - 35182
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||| ||| |||||||| |||| |||||   |||| ||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  35006 caaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaaccccaagtcaagtaaacac 35105  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgcagtcggtatatgtattatccgttc 194  Q
    | | ||| ||  ||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||    
T  35106 tcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttc 35182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 44742 - 44795
Alignment:
Q  65 ttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacact 118  Q
    |||||||||||||||||||||||| | | ||||||||||| |||||||||||||    
T  44742 ttaattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacact 44795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 45123 - 45168
Alignment:
Q  126 agtgttcactttaaacctaactccagcttctaacaactcagttgca 171  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||    
T  45123 agtggtcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 49618735 - 49618589
Alignment:
Q  20 aagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactt 119  Q
    ||||||||||||||| |||||||||| |||||   || |||||  |||||||||||||||||||||||| ||| |||||||||||||||||||||||  |    
T  49618735 aagcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaacatgt 49618637  T
Q  120 attttcagtgttcactttaaacctaactccagcttctaacaactcagt 167  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  49618636 agttttagtgttcactttaaacctaactccagcttctaacaactcagt 49618589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 49613750 - 49613597
Alignment:
Q  18 caaagcaaccatattccgaaataaagtttcggtcgcatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 117  Q
    ||||||||||||||||||||| ||| |||| |||  ||| |||||  | |||||||||||||||||||| | ||| ||||||||||| ||||||||||||    
T  49613750 caaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaatcaagtaaacac 49613651  T
Q  118 ttattttcagtgttcactttaaacctaactccagcttctaacaactcagttgca 171  Q
    | | ||| |||||||||||||||||| || ||||||||||||||||||||||||    
T  49613650 tcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgca 49613597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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