View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6652_low_1 (Length: 438)
Name: NF6652_low_1
Description: NF6652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6652_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 34435058 - 34435487
Alignment:
| Q |
9 |
acatcatcatgtctaaaaatccctttacaaacaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggag |
108 |
Q |
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| T |
34435058 |
acattatcatgtctaaaaatccctttacaaacaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggag |
34435157 |
T |
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| Q |
109 |
catacaatgttgaaaaatcattaccagtaacaatgataggcacacgcgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatc |
208 |
Q |
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| T |
34435158 |
catacaatgttgaaaaatcattaccagtaacaatgataggcacacgtgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatc |
34435257 |
T |
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| Q |
209 |
agcaatgttcataagtgttgcatttaccatttgattgttcactgggtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaag |
308 |
Q |
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| T |
34435258 |
agcaatgttcataagtgttgcatttaccatttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaag |
34435357 |
T |
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| Q |
309 |
agacaacacattttcccttttcttattatgtctgatgcttctctgtatctttgtcgaattagttttgctggttctcccgcatttccactttctagctctc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435358 |
agacaacacattttcccttttcttattatgtctgatgcttctctgtatctttgtcgaattagttttgctggttctcccgcatttccactttctagctctc |
34435457 |
T |
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| Q |
409 |
cagcactcatcatgatagggctggaattat |
438 |
Q |
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| T |
34435458 |
cagcactcatcatgatagggctggaattat |
34435487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 39 - 431
Target Start/End: Original strand, 30665726 - 30666118
Alignment:
| Q |
39 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaa |
138 |
Q |
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| T |
30665726 |
acaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttaccggtga |
30665825 |
T |
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| Q |
139 |
caatgataggcacacgcgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccat |
238 |
Q |
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| T |
30665826 |
caatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccat |
30665925 |
T |
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| Q |
239 |
ttgattgttcactgggtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacattttcccttttcttattatg |
338 |
Q |
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| T |
30665926 |
ctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgataatg |
30666025 |
T |
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| Q |
339 |
tctgatgcttctctgtatctttgtcgaattagttttgctggttctcccgcatttccactttctagctctccagcactcatcatgatagggctg |
431 |
Q |
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| T |
30666026 |
tcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttccactttcaagctctccagcactcatcatgatggggctg |
30666118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 60 - 430
Target Start/End: Original strand, 6853480 - 6853850
Alignment:
| Q |
60 |
gtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaacaatgataggcacacgcgcat |
159 |
Q |
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| T |
6853480 |
gtaggtgcccagtagaatttttccatacgtccatcacgaattaaaggagcatacaacgtagagaagtcattgccagtgacgatgatagggacgcgggcat |
6853579 |
T |
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| Q |
160 |
tctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccatttgattgttcactgggtactg |
259 |
Q |
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| T |
6853580 |
tctcttctttgttgtacataccgggaagttgaacattggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattg |
6853679 |
T |
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| Q |
260 |
tgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacattttcccttttcttattatgtctgatgcttctctgtatctt |
359 |
Q |
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| T |
6853680 |
agtagtgccacccattctaccagctcctgcatcaagatcattgatgaagagacagcacatctttccttttctgataatgtcggacgcctcacggtacctt |
6853779 |
T |
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| Q |
360 |
tgtcgaattagttttgctggttctcccgcatttccactttctagctctccagcactcatcatgatagggct |
430 |
Q |
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| T |
6853780 |
tgcctaatcaactttgcaggctctcctgcatttccactttccaattctccggcactcatcattatagggct |
6853850 |
T |
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