View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6653_high_1 (Length: 663)

Name: NF6653_high_1
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6653_high_1
NF6653_high_1
[»] chr2 (1 HSPs)
chr2 (18-652)||(43908712-43909347)


Alignment Details
Target: chr2 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Complemental strand, 43909347 - 43908712
Alignment:
Q  18 actgaaatgccttataaaaaattgtactgactaattgggtcaaaa-ctatagtctagacgatcaatttatcatatatcctgattcaaatcttaaaataca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909347 actgaaatgccttataaaaaattgtactgactaattgggtcaaaaactatagtctagacgatcaatttatcatatatcctgattcaaatcttaaaataca 43909248  T
Q  117 aacatagcaatagagtctatacagtacccatatggagaatgaacaaacataagaaatatccaatccaaatttacaaaaaatatcatagggcattatgttc 216  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43909247 aacataccaatagagtctatacagcacccatatggagaattaacaaacataagaaatatccaatccaaagttacaaaaaatatcatagggcattatgttc 43909148  T
Q  217 ttctgagagatgctagacgatccgacaagtcctcataatctggtagactaggatgcacatgccctgtggttgttgtcctcatcatttcaggtactaagga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909147 ttctgagagatgctagacgatccgacaagtcctcataatctggtagactaggatgcacatgccctgtggttgttgtcctcatcatttcaggtactaagga 43909048  T
Q  317 agtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaacaggtgaacttgatttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909047 agtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaacaggtgaacttgatttt 43908948  T
Q  417 tcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttcttaacgtatcgcattaaaagtccatctaatatca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43908947 tcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttgttaacgtatcgcattaaaagtccatctaatatca 43908848  T
Q  517 tttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctcactgatcttggtttcgg 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908847 tttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctcactgatcttggtttcgg 43908748  T
Q  617 cttttcagcaggtagagcttcaactgttttcttcat 652  Q
    ||||||||||||||||||||||||||||||||||||    
T  43908747 cttttcagcaggtagagcttcaactgttttcttcat 43908712  T

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