View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6653_high_11 (Length: 443)
Name: NF6653_high_11
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 136 - 397
Target Start/End: Complemental strand, 37956907 - 37956646
Alignment:
| Q |
136 |
aaacttttaagaaaatgcgtaatcttagaatgctccaattctatgatctctcttggagctcaaatgggacctttcatgcatttcttgagagtcttccgga |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37956907 |
aaacttttaagaaaatgcgtaatcttagaatgctccaattctatgatctctcttggagctcaaatgggacctttcatgcatttcttgagagtcttccgga |
37956808 |
T |
|
| Q |
236 |
tgctttaaaatttctttgctaggagaacttccctcaaagatatttgccgcaagctttcccagaaaatcttgttgcacttgaaatgccttctagtgatctt |
335 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37956807 |
tgctttaaaatttctttgttgggagaacttccctcaaagatatttgccgcaagctttcccagaaaatcttgttgcacttgaaatgccttctagtgatctt |
37956708 |
T |
|
| Q |
336 |
gaacaactttgggtggtggatcaggtatttcatttaagctttatgttgtgtgcttatttcgg |
397 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37956707 |
gaacgactttggctggtggatcaggtatttcatttaagctttatgttgtgtgcttatttcgg |
37956646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 37957004 - 37956902
Alignment:
| Q |
1 |
cttaccgtaatggaaccacttttttcttgttttatctctaatagttcccaatgtttgcttgcttgtagggaacagatgcaatccggtgtatattcctaaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957004 |
cttaccgtaatggaacaacttttttcttgttttatctgtaataattcccaatgtttgcttgcttgtagggaacagatgcaatccggtgtatattcctaaa |
37956905 |
T |
|
| Q |
101 |
ctt |
103 |
Q |
| |
|
||| |
|
|
| T |
37956904 |
ctt |
37956902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 390
Target Start/End: Original strand, 37930871 - 37931051
Alignment:
| Q |
214 |
catttcttgagagtcttccggatgctttaaaatttctttgctaggagaacttccctcaaagatatttgccgca--agcttt-cccagaaaatcttgttgc |
310 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||||||||||||| | | ||| | ||| |||||||||| |||||| | || ||| |||||||||||||||| |
|
|
| T |
37930871 |
catttcttaagattctcccggatgatttaaaatttcttcgttgggatagctttcctcaaagatctttgcccctggagttttgcccagaaaatcttgttaa |
37930970 |
T |
|
| Q |
311 |
acttgaaatgccttctagtgatcttgaacaactttgggtggtggatcaggtatttcattt-aagctttatgttgtgtgctt |
390 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||| || ||||||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
37930971 |
acttgatatgcctcatagccgtcttgaacaactttgggagggagatcaggtaattcatttcaagttttatgttgtgtgctt |
37931051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 37930706 - 37930824
Alignment:
| Q |
61 |
gcttgtagggaacagatgcaatccggtgtatattcctaaacttatgttatataatgaaagttcaactacatgctgaaacttttaagaaaatgcgtaatct |
160 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||| || || | |||| |||| || ||||||||| ||||||||| ||||| |||| |||||| |
|
|
| T |
37930706 |
gcttttagggaacagatgcaatccagtgcatattcctggacacgtgcaaaataaagaaaattgaactacatgttgaaactttcaagaagatgcataatct |
37930805 |
T |
|
| Q |
161 |
tagaatgctccaattctat |
179 |
Q |
| |
|
|||||| |||| |||||| |
|
|
| T |
37930806 |
tagaatcatccagttctat |
37930824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University