View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_high_2 (Length: 644)
Name: NF6653_high_2
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 11 - 599
Target Start/End: Original strand, 27441950 - 27442538
Alignment:
| Q |
11 |
cagagatgaattttactaagcatcttatgagcatcaaaataatattcagggaaaatcatcaaaatgaattccttgcagtattatgcactaactggtatca |
110 |
Q |
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| T |
27441950 |
cagagatgaattttactaagcatcttatgagcatcaaaataatattcagggaaaatcatcaaaatgaattccttgcagtattatgcactaactggtatca |
27442049 |
T |
|
| Q |
111 |
taaaataagtccttgactacttcttattcttccaagcacctaatattcctgaatggtatcctctaatatgctgctcattccttcaaggttcttccactta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442050 |
taaaataagtccttgactacttcttattcttccaagcacctaattttcctgaatggtatcctctaatatgctgctcattccttcaaggttcttccacttg |
27442149 |
T |
|
| Q |
211 |
ctcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggcttccaaatctcaacaagaggtgctagcacat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442150 |
ctcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggcttccaaatctcaacaagaggtgctagcacat |
27442249 |
T |
|
| Q |
311 |
ggactacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtc |
410 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442250 |
ggactacgtatcgcatgtcgggacgcttattaggctccttttcacagcagtgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtc |
27442349 |
T |
|
| Q |
411 |
cattttcattgctggatcaatgacattttcaaatgactgtttgatgaaccattcagcaaggttgatgacattgtcttgtcggctgtcgtcgagtgctctt |
510 |
Q |
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| T |
27442350 |
cattttcattgctggatcaatgacattttcaaatgactgtttgatgaaccattcagcaaggttgatgacattgtcttgttggctgtcgtcgagtgctctt |
27442449 |
T |
|
| Q |
511 |
tttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
599 |
Q |
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| T |
27442450 |
tttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
27442538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 182 - 446
Target Start/End: Complemental strand, 11838328 - 11838064
Alignment:
| Q |
182 |
tgctcattccttcaaggttcttccacttactcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
281 |
Q |
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|||||||||||||| | |||| ||||||| ||| | ||| ||| ||||||||| |||||| || |||| || ||||| ||||||||||||||||||| |
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| T |
11838328 |
tgctcattccttcatgattctgccacttaatcagtgcttgaggcaaactcatatccaagtcaatcccatatatatcatcaacatcaggttcagccggctt |
11838229 |
T |
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| Q |
282 |
ccaaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaata |
381 |
Q |
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||||||||| ||||| ||||||||||||| ||||||| || |||||| || ||| |||||||||| || |||| || || || |||||| |||||||| |
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| T |
11838228 |
ccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcacaacagtggctagccaatcctgcaata |
11838129 |
T |
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| Q |
382 |
gtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttcaaatga |
446 |
Q |
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| T |
11838128 |
gtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaatgaccttttcaaatga |
11838064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 182 - 440
Target Start/End: Original strand, 11855511 - 11855769
Alignment:
| Q |
182 |
tgctcattccttcaaggttcttccacttactcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
281 |
Q |
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|||||||||||||||| |||| | |||||||| | ||| ||| |||| |||| |||||| || |||| ||||||||| |||| ||||||||||||||| |
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| T |
11855511 |
tgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatatacaagtcaatcccatacatgtcatcagcattaggttcagccggctt |
11855610 |
T |
|
| Q |
282 |
ccaaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaata |
381 |
Q |
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||||||||||||||||||||||| ||||| |||||||||| ||| ||| || ||| || ||||||| || ||||||| || ||||||||||||| ||| |
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| T |
11855611 |
ccaaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatg |
11855710 |
T |
|
| Q |
382 |
gtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttc |
440 |
Q |
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| T |
11855711 |
atcctgaaactctccaagccttcctcgttgatgtccattgctggatcaatgaccttttc |
11855769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 182 - 446
Target Start/End: Complemental strand, 11851011 - 11850747
Alignment:
| Q |
182 |
tgctcattccttcaaggttcttccacttactcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
281 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| | | ||| ||| ||||| ||| |||||| || |||| ||||||||| || ||||||||||||||||| |
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| T |
11851011 |
tgctcgttccttcaagattcggccacttactaagtccttgaggaaaacttatatccaagtcaatcccatacatgtcatcagcttcaggttcagccggctt |
11850912 |
T |
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| Q |
282 |
ccaaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaata |
381 |
Q |
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||||||||| ||||||||||||||||||| ||||| | || |||||| || ||| || ||||||| || |||| ||||| ||||||||| |||| ||| |
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| T |
11850911 |
ccaaatctcgacaagaggtgctagcacattcactacatgtcccatgtcaggacgctgatgaggctcccttgcacaacattggcttgccaatcctgccata |
11850812 |
T |
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| Q |
382 |
gtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttcaaatga |
446 |
Q |
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| T |
11850811 |
gtcctgaaactctccaggccttcctcgtctatgtccattgctggatcaatgaccttttcgaatga |
11850747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 511 - 598
Target Start/End: Complemental strand, 11837984 - 11837897
Alignment:
| Q |
511 |
tttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcata |
598 |
Q |
| |
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||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
11837984 |
tttccggttatcatctccataagaatcacaccatagctgtatacgtctacctttgtggtgactcggccagtgactgtgacatatcata |
11837897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 11850666 - 11850579
Alignment:
| Q |
512 |
ttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
599 |
Q |
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|||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
11850666 |
ttccggttatcatctccataagaatcacgccatagctgtatacgtctacctttgtggtgactcgaccggtgactgtgacatatcatac |
11850579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 11855850 - 11855943
Alignment:
| Q |
506 |
ctctttttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
599 |
Q |
| |
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|||| ||||| ||||||||| |||| |||||||| ||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
11855850 |
ctctctttccggttatcatctccataagaatcacgccatagctgtacacgtctaactttgtggtgactcggccggtgactgtgacatatcatac |
11855943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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