View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6653_high_21 (Length: 293)

Name: NF6653_high_21
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6653_high_21
NF6653_high_21
[»] chr5 (6 HSPs)
chr5 (11-278)||(41712613-41712880)
chr5 (26-278)||(42129664-42129916)
chr5 (39-276)||(34239621-34239858)
chr5 (39-228)||(34231917-34232106)
chr5 (23-147)||(41571203-41571327)
chr5 (171-276)||(42124434-42124539)
[»] chr2 (3 HSPs)
chr2 (27-276)||(12249264-12249513)
chr2 (166-277)||(32681106-32681217)
chr2 (56-186)||(9422881-9423011)
[»] chr3 (1 HSPs)
chr3 (54-276)||(8523847-8524069)
[»] chr6 (1 HSPs)
chr6 (29-278)||(25522084-25522333)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 41712880 - 41712613
Alignment:
Q  11 cagagatactagattttgaagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41712880 cagagatactagattttgaagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtctagtctagttaggtttataagtttg 41712781  T
Q  111 aaaattgattctggaatattgccttctagtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41712780 aaaattgattctggaatattgccttctagtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggt 41712681  T
Q  211 tatttgatagatctaaatcttccaaagaatgaaaggaaaacaaggagggaggaattgttccatttaac 278  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  41712680 tatttgatagatctaaatcttccaaagaaggaaaggaaaacaaggagggaggaattgctccatttaac 41712613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 42129664 - 42129916
Alignment:
Q  26 ttgaagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctgga 125  Q
    |||||||| ||| |||| ||||||||||| |||| |||| ||||||||||||||||| | |||   ||||| ||||  ||| |||||||| |||| ||||    
T  42129664 ttgaagtttggaaaagtgttgaaaatcaataacatcactcaagttgtttgatgatagatctagcaaagttaagtttgcaaggttgaaaatagattttgga 42129763  T
Q  126 atattgccttctagtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatcta 225  Q
    |||||||||| ||| |||||||||  ||||| ||||| || |||||||||||||||||||||| ||||||||| | |||| || |||||||||||| |||    
T  42129764 atattgccttgtagcttgttgccgcttagatctagcttctttaaggaatatgatgagattgcagtgatatgccttgtaagacgattatttgatagaacta 42129863  T
Q  226 aatcttccaaagaatgaaaggaaaacaaggagggaggaattgttccatttaac 278  Q
    |||   |||||||  | || || |||||||||| |||||||||||||||||||    
T  42129864 aatgaaccaaagacggcaaagataacaaggaggaaggaattgttccatttaac 42129916  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 34239858 - 34239621
Alignment:
Q  39 aagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctggaatattgccttcta 138  Q
    |||| ||||||||  ||||||||||| |||||||||||||||||  ||||| || ||||||||  ||| ||||||||||| | ||||||||  |||| ||    
T  34239858 aagtcttgaaaattgacaacaccactcaagttgtttgatgatagacatagtgtaattaggtttgcaaggttgaaaattgaatttggaatatcaccttgta 34239759  T
Q  139 gtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaaatcttccaaaga 238  Q
    | ||||||  | ||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||||||| || ||||||||||  | |  | |||||||    
T  34239758 gcttgttgttgcatagagatagatactctaaggaatatgatgagatttcactgataggccctgtaagtcgattgtttgatagatacagaagtaccaaaga 34239659  T
Q  239 atgaaaggaaaacaaggagggaggaattgttccattta 276  Q
    | | || || |||||||||| |||||||||||||||||    
T  34239658 aggcaaagataacaaggaggaaggaattgttccattta 34239621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 34232106 - 34231917
Alignment:
Q  39 aagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctggaatattgccttcta 138  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||| | || |  || ||  |||| ||| |||||||||||||||||||||||||||| ||    
T  34232106 aagtgttgaaaattgacaacaccactcaagttgtttgatgatagatctaatacagctaaatttacaaggttgaaaattgattctggaatattgccttgta 34232007  T
Q  139 gtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaaat 228  Q
    | ||||| |||  ||||| |||  ||||||| ||||| || ||||||||| ||||||||||| ||||| | || |||||||||| |||||    
T  34232006 gcttgttaccgcctagatttagagcctctaacgaataggacgagattgcactgatatgccctgtaagttgattgtttgatagatataaat 34231917  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 41571327 - 41571203
Alignment:
Q  23 attttgaagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattct 122  Q
    ||||||||||| ||| ||||||| |||||  |||| |||||| |||||||||||||| ||| ||||| |||||||||||| ||| |||||||| |||||     
T  41571327 attttgaagtttggaaaagtatttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattca 41571228  T
Q  123 ggaatattgccttctagtttgttgc 147  Q
    ||||||| ||||| ||| |||||||    
T  41571227 ggaatatcgccttgtagcttgttgc 41571203  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 42124434 - 42124539
Alignment:
Q  171 gaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaaatcttccaaagaatgaaaggaaaacaaggagggaggaattgttc 270  Q
    ||||||||||| ||| || ||||||||||| ||||||| |||| |||||||||||||  | |||||||| | || || |||||||||| ||||| |||||    
T  42124434 gaatatgatgatatttcactgatatgccctgtaagtcgattatatgatagatctaaaattgccaaagaaggcaaagataacaaggaggaaggaactgttc 42124533  T
Q  271 cattta 276  Q
    ||||||    
T  42124534 cattta 42124539  T

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Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 12249264 - 12249513
Alignment:
Q  27 tgaagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctggaa 126  Q
    ||||||| ||| |||  ||||||||||||||||||||| ||||||||||||||||  | ||||||||||||| || |||| |||||||| |||| |||||    
T  12249264 tgaagtttggaaaagagttgaaaatcaacaacaccactcaagttgtttgatgataaatctagtctagttagggttgtaaggttgaaaatggattttggaa 12249363  T
Q  127 tattgccttctagtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaa 226  Q
    ||||||||| ||| ||||| ||  |||||||||||   ||||| ||||| |||||||||||| ||||||| ||| ||| ||| || ||||| || ||||     
T  12249364 tattgccttgtagcttgttaccagatagatatagcgtatctaacgaatacgatgagattgcactgatatgtcctgtaaatcgattgtttgacagctctag 12249463  T
Q  227 atcttccaaagaatgaaaggaaaacaaggagggaggaattgttccattta 276  Q
    || |||||||||| | || || ||||||| ||||||||||||||| ||||    
T  12249464 atgttccaaagaaggcaaagataacaaggtgggaggaattgttccgttta 12249513  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 32681217 - 32681106
Alignment:
Q  166 ctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaaatcttccaaagaatgaaaggaaaacaaggagggaggaat 265  Q
    ||||| ||||||||||||||||| |||||| |||| ||||| |||||||||||||||| |||| ||||||| || | || || |||||| ||| ||||||    
T  32681217 ctaagtaatatgatgagattgcattgatataccctctaagtaggttatttgatagatccaaatattccaaataaggcaaagataacaagaaggaaggaat 32681118  T
Q  266 tgttccatttaa 277  Q
     |||||||||||    
T  32681117 cgttccatttaa 32681106  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 9423011 - 9422881
Alignment:
Q  56 aacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctggaatattgccttctagtttgttgccgaataga 155  Q
    ||||||| | || ||||| || ||||| ||||||  |||||||||| |||| |||| || ||||| ||||||||| | || ||| ||||| |   ||| |    
T  9423011 aacaccattcaaattgttagaggatagatatagtacagttaggtttctaaggttgataaatgattttggaatatttctttatagcttgtttctagataaa 9422912  T
Q  156 tatagctcctctaaggaatatgatgagattg 186  Q
    |||||   |||||||||||||||||||||||    
T  9422911 tatagtatctctaaggaatatgatgagattg 9422881  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 276
Target Start/End: Original strand, 8523847 - 8524069
Alignment:
Q  54 acaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctggaatattgccttctagtttgttgccgaata 153  Q
    ||||||||||| ||||||||||||||||| | ||||||| ||||||||  ||| |||||||| ||||||||||||||||||| |||  |||||     ||    
T  8523847 acaacaccactcaagttgtttgatgatagatctagtctacttaggtttgcaaggttgaaaatggattctggaatattgccttgtagcctgttgttactta 8523946  T
Q  154 gatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaaatcttccaaagaatgaaaggaaaacaa 253  Q
    || ||||   ||||||||||||||||||||||||  |||||| |||| ||||| | |||||||||| ||||||  ||  |||| |  | ||||| |||||    
T  8523947 gagatagaaactctaaggaatatgatgagattgcgctgatattccctgtaagttgattatttgataaatctaatactagcaaaaatggcaaggataacaa 8524046  T
Q  254 ggagggaggaattgttccattta 276  Q
    ||||||||||||||| |||||||    
T  8524047 ggagggaggaattgtaccattta 8524069  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 25522333 - 25522084
Alignment:
Q  29 aagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtatagtctagttaggtttataagtttgaaaattgattctggaata 128  Q
    ||||| ||| |||| ||||||||  |||| |||||| |||| |||| | |||||   |||  ||||||||||| |||| |||||||| ||||||||||||    
T  25522333 aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata 25522234  T
Q  129 ttgccttctagtttgttgccgaatagatatagctcctctaaggaatatgatgagattgcaatgatatgccctataagtcggttatttgatagatctaaat 228  Q
    ||||||| ||| ||||||  | |||||| ||    ||||||||||||||||||| ||||| |||||   ||| ||||||| || || ||||||| |||||    
T  25522233 ttgccttgtagcttgttgttgtatagatttaaactctctaaggaatatgatgaggttgcactgatagatcctgtaagtcgattgttagatagatataaat 25522134  T
Q  229 cttccaaagaatgaaaggaaaacaaggagggaggaattgttccatttaac 278  Q
     | |||||||| | || || ||||| |||| |||||||||||||||||||    
T  25522133 ataccaaagaaggcaaagataacaaagaggaaggaattgttccatttaac 25522084  T

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