View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6653_high_22 (Length: 275)

Name: NF6653_high_22
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6653_high_22
NF6653_high_22
[»] chr6 (10 HSPs)
chr6 (11-261)||(2951777-2952027)
chr6 (23-261)||(3003768-3004006)
chr6 (23-261)||(2927007-2927245)
chr6 (23-261)||(2934446-2934687)
chr6 (67-261)||(2964391-2964597)
chr6 (59-261)||(2973896-2974095)
chr6 (67-261)||(2997378-2997584)
chr6 (26-261)||(2658981-2659228)
chr6 (67-261)||(2982763-2982951)
chr6 (218-261)||(2937505-2937548)
[»] chr3 (2 HSPs)
chr3 (68-261)||(49618306-49618506)
chr3 (130-258)||(49613399-49613527)
[»] scaffold0024 (2 HSPs)
scaffold0024 (30-120)||(35361-35451)
scaffold0024 (151-261)||(35232-35342)
[»] chr7 (1 HSPs)
chr7 (59-98)||(3339052-3339091)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 2951777 - 2952027
Alignment:
Q  11 tatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaattt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951777 tatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaattt 2951876  T
Q  111 acagtctttcattgactaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattt 210  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2951877 acagtctttcattgactaatgttcctatcactatgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattt 2951976  T
Q  211 tgataagggtgatattagtataaggcacttcactgatctgattaggatatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951977 tgataagggtgatattagtataaggcacttcactgatctgattaggatatt 2952027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 3004006 - 3003768
Alignment:
Q  23 ctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat 122  Q
    ||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004006 ctctttaaaccttggttagataatggtataagaaacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat 3003907  T
Q  123 tgactaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtga 222  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3003906 tgactaatgttcctaccactatgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtga 3003807  T
Q  223 tattagtataaggcacttcactgatctgattaggatatt 261  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  3003806 tattagtataagtcacttcactgatctgattaggatatt 3003768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 2927007 - 2927245
Alignment:
Q  23 ctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat 122  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2927007 ctctttaaaccttggttagataatggtataagacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat 2927106  T
Q  123 tgactaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtga 222  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  2927107 tgactaatgttcctaccactatgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattgaattttgataagggtga 2927206  T
Q  223 tattagtataaggcacttcactgatctgattaggatatt 261  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  2927207 tattattataaggcacttcactgatctgattcggatatt 2927245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 2934446 - 2934687
Alignment:
Q  23 ctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat 122  Q
    ||||||||||||| ||||| ||||||||||| | ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934446 ctctttaaacctttgttagatactggtataacagacgatttaatgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat 2934545  T
Q  123 tgactaatgttcccaacactatgatcca---ttcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataaggg 219  Q
    ||||||||| ||||||||||||||| ||   ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2934546 tgactaatgatcccaacactatgatacaatattcttttcttagactcactattcattattttggttattacaataaatcaaaattggattttgataaggg 2934645  T
Q  220 tgatattagtataaggcacttcactgatctgattaggatatt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2934646 tgatattagtataaggcacttcactgatctgattaggatatt 2934687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 2964391 - 2964597
Alignment:
Q  67 gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattga------------ctaatgttcccaacactatgatccattct 154  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            ||| |||||| |||||||  |||| ||||    
T  2964391 gttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgttcctaacactaacatcccttct 2964490  T
Q  155 tttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgatta 254  Q
    |||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964491 tttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgatta 2964590  T
Q  255 ggatatt 261  Q
    |||||||    
T  2964591 ggatatt 2964597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 59 - 261
Target Start/End: Original strand, 2973896 - 2974095
Alignment:
Q  59 gatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcccaacactatgatccattcttttc 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||| ||||||||||||||||||||||    
T  2973896 gatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtatttcattgac---tgttcctaacactatgatccattcttttc 2973992  T
Q  159 ttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggat 258  Q
    ||||||||||||||  ||| |||   | || ||| ||| ||||||||| |||||||||   |||||||||||||| |||||||| |||||||||||||||    
T  2973993 ttaaactcactattgcttactttcaatgtttcaataaaccaaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggat 2974092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 261
Target Start/End: Complemental strand, 2997584 - 2997378
Alignment:
Q  67 gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattga------------ctaatgttcccaacactatgatccattct 154  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |            ||| |  ||| ||||||||||||| || |    
T  2997584 gttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtaatcctaacactatgatcccttgt 2997485  T
Q  155 tttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgatta 254  Q
    |||||| ||||||||||| ||| |||   || || ||| |||||||| |||  ||||||| | |||||||||||||||||||||||||||||||||||||    
T  2997484 tttcttgaactcactattaattttttcttttctttcaataaatcaaacttgttttttgatgatggtgatattagtataaggcacttcactgatctgatta 2997385  T
Q  255 ggatatt 261  Q
    |||||||    
T  2997384 ggatatt 2997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 2659228 - 2658981
Alignment:
Q  26 tttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattga 125  Q
    |||||||||||||||| |  |||||||  |   ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||    
T  2659228 tttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaatttacaaactttcatcga 2659129  T
Q  126 ------------ctaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttga 213  Q
                ||| |||||| || |||| ||||| |  ||||||| ||||||||||| | ||||||  || || ||| |||||||| |||  ||||||    
T  2659128 gttctacaaatgctagtgttcctaagactacgatccctggttttcttgaactcactattaaatatttttattcttccaataaatcaaacttgttttttga 2659029  T
Q  214 taagggtgatattagtataaggcacttcactgatctgattaggatatt 261  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||    
T  2659028 taatggtgatattagtataatgcacttcactgatctgattaggatatt 2658981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 2982763 - 2982951
Alignment:
Q  67 gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcccaacacta---tgatccattcttttcttaaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||  | || |   || ||| |||||||||| ||    
T  2982763 gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtcgttcat--------gttccatatacaaaagtgttcc-ttcttttcttgaa 2982853  T
Q  164 ctcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatt 261  Q
    |||||||| ||||| |||    | |  || ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2982854 ctcactatccattactttaaaaaattgaataaatcaaaattgtcttttgataatggtgatattagtataaggcacttcactgatctgattaggatatt 2982951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 2937505 - 2937548
Alignment:
Q  218 ggtgatattagtataaggcacttcactgatctgattaggatatt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  2937505 ggtgatattagtataagtcacttcactgatctgattaggatatt 2937548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 49618306 - 49618506
Alignment:
Q  68 ttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcccaacactatgatccattcttttcttaaactca 167  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |  | |   ||| ||||| ||||||||||||||| |    
T  49618306 ttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttcattgacttatatcactacgtctaagatcccttcttttcttaaactta 49618405  T
Q  168 ctattcattattttggttattac-------aaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatat 260  Q
    || || ||||||||  |||||         || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  49618406 ctttttattatttttattattttgattattaataaatcaaaattggattttgatgacggtgatattagtataaggcacttcactgatctgattaggatat 49618505  T
Q  261 t 261  Q
    |    
T  49618506 t 49618506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 49613399 - 49613527
Alignment:
Q  130 tgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagt 229  Q
    ||||||||| ||||  |||| |||||||||| |||| | | || |||||||||  ||||||||  ||||||| |||| ||||||||| || ||| |||||    
T  49613399 tgttcccaagactaaaatcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggcgattttagt 49613498  T
Q  230 ataaggcacttcactgatctgattaggat 258  Q
    |||||||||||||||||||||||||||||    
T  49613499 ataaggcacttcactgatctgattaggat 49613527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 35451 - 35361
Alignment:
Q  30 aaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttc 120  Q
    |||||||||||| | ||||||||| |   ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35451 aaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttc 35361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 35342 - 35232
Alignment:
Q  151 ttcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatatt-agt--ataaggcacttcactgat 247  Q
    |||||||||| ||||||||||| ||||||||   |||| |||  |||||||||||| |||||||||   | ||| | |||  ||||||||||||||||||    
T  35342 ttcttttcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgataa---taatagtcagtgcataaggcacttcactgat 35246  T
Q  248 ctgattaggatatt 261  Q
    ||||||||||||||    
T  35245 ctgattaggatatt 35232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 3339052 - 3339091
Alignment:
Q  59 gatttatggttacttgaaaatcagcttccctttttcgtta 98  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  3339052 gatttattgttacttgaaaatcagcttccctttttcgtta 3339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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