View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_high_24 (Length: 252)
Name: NF6653_high_24
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2618087 - 2618321
Alignment:
| Q |
1 |
caagaatagaagttgtgagggagagnnnnnnngtattgtaccacgtgtgccgagaggtagtttgcattaaagagaaatcagattggaaaaaactaagaag |
100 |
Q |
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| T |
2618087 |
caagaatagaagttgtgagggagagtttttttgtattgtaccacatgtgccgagaggtagtttgcattaaagagaaatcagattggaaaaaactaagaag |
2618186 |
T |
|
| Q |
101 |
aaccgtacaaagtagttgttctgggtgtttgagatatgtgatcaaagacaagccgaaactacaactttaagtaattggatatcaagaatctcaacattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2618187 |
aaccgtacaaagtagttgttctgggtgtttgagatatgtgatcagagacaagccgaaactacaactttaagtaattggatatcaagaatctcaacattta |
2618286 |
T |
|
| Q |
201 |
gatatgaagagagaagggaaacaagaattaggttt |
235 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
2618287 |
gatatgaaaagagaagggaaacaagaattaggttt |
2618321 |
T |
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