View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_high_26 (Length: 249)
Name: NF6653_high_26
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_26 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 38877755 - 38877514
Alignment:
| Q |
8 |
attatactatattatctatatttacttattttcaaaactacgggtcttacaattcgcaactctccaattagacaacagctgcctagctcgctccaatata |
107 |
Q |
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| T |
38877755 |
attatactatattatctatatttaattattttcaaaactacgggtcttacaattcgcaactctccaattagacaacagctgcctagctcgctccaatata |
38877656 |
T |
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| Q |
108 |
gcttgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgaca |
207 |
Q |
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| T |
38877655 |
gcttgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacatactccacacaactgttgcaaacaactcagcttgaccatgtgaca |
38877556 |
T |
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| Q |
208 |
gttcctgcagcagcgcaaaagtgatttcagccgctgtgttat |
249 |
Q |
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| T |
38877555 |
gttcctgcagcagcgcaaaagtgatttcagccgctgtgttat |
38877514 |
T |
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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 5777771 - 5777678
Alignment:
| Q |
156 |
ttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgttat |
249 |
Q |
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| T |
5777771 |
ttccacaaactccacacaaccattgcaaacaactcaccttgaacatgtgacagttcttgcagcaacgcaaaagtgatttcagccgctgtgttat |
5777678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 15662425 - 15662458
Alignment:
| Q |
151 |
gactcttccacaaactccacacaattgttgcaaa |
184 |
Q |
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| T |
15662425 |
gacttttccacaaactccacacaattgttgcaaa |
15662458 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 30092485 - 30092665
Alignment:
| Q |
67 |
ctctccaattagacaacagctgcctagctcgctccaatatagcttgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacaaact |
166 |
Q |
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| T |
30092485 |
ctctccatttaaataacagctgcctcgcgtgctccaatatggcctgggctgtttccgtaacattctgccataaccgtaaattgcggtttgtccacaaact |
30092584 |
T |
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| Q |
167 |
ccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgtt |
247 |
Q |
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| T |
30092585 |
ccaaagtaccgttgcaaacaactgagcttgagcatgtgacagatcttgtaacaatgcaaaaatgatttcagccactgtgtt |
30092665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 25938481 - 25938356
Alignment:
| Q |
123 |
gtaacattctgcaataaccttatattgtgactcttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcg |
222 |
Q |
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| T |
25938481 |
gtaacattctgccacaacctcaaattacggctcttccacaaactccaaagaaccgtt-caaacaactcagtttgaacgaatgacagttcttgcagcaacg |
25938383 |
T |
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| Q |
223 |
caaaagtgatttcagccgctgtgttat |
249 |
Q |
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| T |
25938382 |
caaagatgatttcagccgttgtgttat |
25938356 |
T |
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