View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_high_29 (Length: 229)
Name: NF6653_high_29
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2717497 - 2717725
Alignment:
| Q |
1 |
tcatctgatagttctcccatatcaaaccctgatcattgttaaatagcaaaatataaggctataatatacacttaaatgtacatatttaacagttacaaaa |
100 |
Q |
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| T |
2717497 |
tcatctgatagttctcccatatcaaaccctgatcattgttaaatagcaaaatataaggctataatatacacttaaatgtacatatttaacagttacacaa |
2717596 |
T |
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| Q |
101 |
ttctgatttagtaaggnnnnnnnctaagagaacaagagggatttaacattacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggag |
200 |
Q |
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| T |
2717597 |
ttctgatttaataaggaaaaaaactaagagaacaagagggatttaacattacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggag |
2717696 |
T |
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| Q |
201 |
cagttggacaaatccattttatctgcatc |
229 |
Q |
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| T |
2717697 |
cagttggacaaatccattttatctgcatc |
2717725 |
T |
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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17900447 - 17900541
Alignment:
| Q |
1 |
tcatctgatagttctcccatatcaaaccctgatcattgttaaatagcaaaatataaggctataatatacacttaaatgtacatatttaacagtta |
95 |
Q |
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| T |
17900447 |
tcatctgaaagttctcccatatcaaaccctgatcattgttaaataacaaaatgtaaggttataatatatacttatctgtgcatacttaacagtta |
17900541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 44432893 - 44432816
Alignment:
| Q |
148 |
attacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggagcagttggacaaatccattttatctg |
225 |
Q |
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| T |
44432893 |
attacatgcagtgcagggaaaaccaccaagtatcgccacgggacgggtaggagcagtagggcaaatccattttatctg |
44432816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 49635529 - 49635605
Alignment:
| Q |
149 |
ttacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggagcagttggacaaatccattttatctg |
225 |
Q |
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| T |
49635529 |
ttacaagcagtgcaaggaaatccaccaaataaggctacaggccgcgtaggagcagttggacaaatccatttaatctg |
49635605 |
T |
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