View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6653_high_31 (Length: 216)
Name: NF6653_high_31
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 5336450 - 5336618
Alignment:
| Q |
33 |
aatttcaattcatctgctttaagtttctggttcaggagcgggaggccgtagaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatca |
132 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5336450 |
aatttcaattcatctgcttcaagtttctggttcaggagcgggaggccgcagaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatca |
5336549 |
T |
|
| Q |
133 |
gcttcatcttgcaaacacagtgctgctatagctgcaacctgcatagacaatgatattcattgttacaac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5336550 |
gcttcatcttgcaaacacagtgctgctatagctgcaacctgcatagacaatgatattcattgttacaac |
5336618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 52719296 - 52719131
Alignment:
| Q |
36 |
ttcaattcatctgctttaagtttctggttcaggagcgggaggccgtagaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatcagct |
135 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52719296 |
ttcaattcatctgcttcaagtttctggtgcaggagcgggagccttcagaagtggctggagtgctttaacaacaatgctcatattgggcctaaactcagct |
52719197 |
T |
|
| Q |
136 |
tcatcttgcaaacacagtgctgctatagctgcaacctgcatagacaatgatattcattgttacaac |
201 |
Q |
| |
|
|||| |||| ||| |||||||||| |||||||| ||||| || ||| ||||| |||||||||||| |
|
|
| T |
52719196 |
tcatactgcacacaaagtgctgctacagctgcaagctgcacagtcaacgatatccattgttacaac |
52719131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 23410164 - 23410107
Alignment:
| Q |
82 |
agaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatcagcttcat |
139 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| |||| || ||||||||||||||||||| |
|
|
| T |
23410164 |
agaagtggctggagagctttgacaacaattgtcatgtttggcctaaaatcagcttcat |
23410107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 37217073 - 37216988
Alignment:
| Q |
82 |
agaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatcagcttcatcttgcaaacacagtgctgctatagctgc |
167 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| |||| || |||| ||||||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
37217073 |
agaagtggctggagagctttgacaacaattgtcatgtttggccggaaatcagcttcatattgcacacacagtgctgcaacagctgc |
37216988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University