View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_high_8 (Length: 481)
Name: NF6653_high_8
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 1450398 - 1449943
Alignment:
| Q |
18 |
gtacctacaaatactttgatgctcaagtcagtgagagaatgtgtttctctactttcaaatatgattattcaattcaagggtgatttttaactacttttct |
117 |
Q |
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| T |
1450398 |
gtacctacaaatactttgatgctcaggtcagtgagagaatgggtttctctactttcaaatatgattattcaattcaatggtgatttttaactacttttct |
1450299 |
T |
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| Q |
118 |
tatttaattgtatcaacttttcttgaaaattataggttttcctttttaatagggcattacctctgnnnnnnnnnnn-------ctacattaatttttcat |
210 |
Q |
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| T |
1450298 |
tatttaatcgtatcaacttttcttgaaaattataggttttcctttttaatagggcattacctctgttttttttttttttttttctatattaatttttcat |
1450199 |
T |
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| Q |
211 |
cttaattatacaaatattttacaagcacaaggaaccacagaaaagctaaggcaattggcttaaaactacaacggagcagtttgtacataaaactatttct |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
1450198 |
cttaattatacaaacattttacaagcacaaggaaccacagaaaagctaaggcaattggcttaaaactacaatggagcagtttgtacataaaactattgct |
1450099 |
T |
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| Q |
311 |
tggattgtctttatatcttgaatttatcaaaacataaattattgctgaaacctaaatatacaaatgaacaaataaggaagatatatcagcaataaaagaa |
410 |
Q |
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| T |
1450098 |
tggattgtctttatatcttgaatttatgaaaacataaattattgctgaaacctaaatatacaaatgaacaaataaggaagatatatcagcaataaaagaa |
1449999 |
T |
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| Q |
411 |
tgataaagcttctatatatcttctaagacatttaggtggagctttctagctttgct |
466 |
Q |
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| T |
1449998 |
tgataaagcttctatatatcttctaagacatttaggtggagctttctagctttgct |
1449943 |
T |
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