View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6653_low_11 (Length: 459)

Name: NF6653_low_11
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6653_low_11
NF6653_low_11
[»] chr7 (1 HSPs)
chr7 (16-451)||(44871883-44872318)
[»] chr3 (12 HSPs)
chr3 (243-446)||(47527797-47527997)
chr3 (90-451)||(47527374-47527738)
chr3 (180-451)||(47527599-47527870)
chr3 (92-361)||(47527844-47528110)
chr3 (38-324)||(47522127-47522413)
chr3 (180-432)||(47527866-47528115)
chr3 (188-435)||(47522145-47522389)
chr3 (158-291)||(47527778-47527911)
chr3 (305-451)||(47522127-47522273)
chr3 (339-445)||(47522227-47522333)
chr3 (38-83)||(47527856-47527901)
chr3 (253-328)||(47549704-47549782)


Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 44872318 - 44871883
Alignment:
Q  16 aaacactcttcaactgcagcaccaatttcttcgtctccattagagttgaaaaagctatcgagagaatcccatcaaacagcagcagcaacaattttttcct 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  44872318 aaacactcttcaaccgcagcaccaatttcttcgtctccattagagttgaaaaagcgatcgagagaatcccatgaaacagcagcagcaacaattttttcct 44872219  T
Q  116 ctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44872218 ctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtagcaagagcatttactttgtctgcattacagtcgaaggagcgaccgggagaatc 44872119  T
Q  216 cgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872118 cgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttct 44872019  T
Q  316 tctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44872018 tctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaagaat 44871919  T
Q  416 ccaaggaagaagcagcagcatcaatttattcttctc 451  Q
    ||||||||||||||||||||||||||||||||||||    
T  44871918 ccaaggaagaagcagcagcatcaatttattcttctc 44871883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 243 - 446
Target Start/End: Original strand, 47527797 - 47527997
Alignment:
Q  243 tttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccg 342  Q
    |||| |||| || |||||||  |||| |||||||  ||| || ||||||||| ||||||||   |||||||| ||||||||||||||||||| |||||||    
T  47527797 tttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaaca---atttcttcgtctccattacagttgaaagagcaaccg 47527893  T
Q  343 agagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaattt 442  Q
    |||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||||||||||||  ||||| | |||||| ||||||| ||| |||||    
T  47527894 agagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaattt 47527993  T
Q  443 attc 446  Q
    ||||    
T  47527994 attc 47527997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 90 - 451
Target Start/End: Original strand, 47527374 - 47527738
Alignment:
Q  90 aacagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcatta 189  Q
    |||||||||| ||| ||||| ||  ||| ||| ||||| |||||| || |  ||| ||||| ||||||| | | | ||||||||| |||| |||  | ||    
T  47527374 aacagcagcaacaataatttctttgtctccatcacagtcgaaaaagcgtcctagagaatccgaggaagctggagctagagcattttctttttctcaacta 47527473  T
Q  190 cagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaag 289  Q
    |||  || |||||||| | || |||| |||||||||||||||||||||||||||| | |   |||||  ||  ||||||||| |||| ||||||||||||    
T  47527474 cagccgacggagcgacagagaaaatctgaggaaacagcagcaacatcaatttattcgtcctgtttactttctgaagagcaaccgagagaatccgaggaag 47527573  T
Q  290 cagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtag---ctagagcattttctttgtctcc 386  Q
     ||  ||||||||| |||| | ||  ||||||||||||| ||| | ||||| ||||||||||| |||||||| ||   | | | || |||||||||||||    
T  47527574 aagtgacaacaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctcc 47527673  T
Q  387 attacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaatttattcttctc 451  Q
    ||||||||||||||||||||||| ||||||  |||||| |||||||  |||||| ||||| ||||    
T  47527674 attacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaatatattcatctc 47527738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 180 - 451
Target Start/End: Original strand, 47527599 - 47527870
Alignment:
Q  180 gtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaa---tttatttgcctcctttacagtcgaaagagcaactgaga 276  Q
    |||| ||||||||| ||| |||| || | ||||||||| |||| ||||||||||| |||   ||| |||| |||| |||||||||||||||| |||||||    
T  47527599 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgaga 47527698  T
Q  277 aaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcatttt 376  Q
     |||| |||||||||||| ||| | ||   || | ||| |||||||||||| |||||||||||||||  |||||||||| | ||||||| |||| |||||    
T  47527699 gaatctgaggaagcagcagcaatatca---atatattcatctccattacagctgaaagtgcaaccgaaggaatccgaggtatcagtagcaagaggatttt 47527795  T
Q  377 ctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaatttattcttctc 451  Q
    ||||||||||||| |||||||  |||||||||| || |||  | |||| ||||||| || |||||| ||| ||||    
T  47527796 ctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttcttcgtctc 47527870  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 361
Target Start/End: Original strand, 47527844 - 47528110
Alignment:
Q  92 cagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcattaca 191  Q
    |||||||| ||||||||| ||| ||| |||||||||||||| | | || |||| ||||  |||||||| ||  ||||||||||   |||||| |||||||    
T  47527844 cagcagcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaatctgaggaagcattagtaagagcattttacttgtctccattaca 47527943  T
Q  192 gttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagca 291  Q
    || ||| ||||||| | |||||| ||||||| |||||||||||| |||||||| |  ||| ||||||   |||||||||  |||| |||| || ||||||    
T  47527944 gtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaatctgatgaagca 47528043  T
Q  292 gcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcag 361  Q
    ||| ||| ||   ||||||||   ||||||||||||  ||||  |||||| |  ||||||||||||||||    
T  47528044 gcatcaaaaa---caatttctctgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcag 47528110  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 47522127 - 47522413
Alignment:
Q  38 caatttcttcgtctccattagagttgaaaaagctatcgagagaatcccatcaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacg 137  Q
    ||||||||||| ||||| || |||||||||||  ||||||||||||| |  |||||| || | ||||||||| |   ||| |||| |||| ||||||  |    
T  47522127 caatttcttcgcctccactacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagag 47522226  T
Q  138 acagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatca 237  Q
    || |||| ||||  ||||| ||| | ||| | || ||  || |||| | ||||| | ||| |||| |||| |||||||| ||||| ||||||||||||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatca 47522326  T
Q  238 atttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccatta 324  Q
    || |||| | |||| || | |||||||||| |||||||| |||||||||| | |||| || ||||  |||||||||  |||||||||    
T  47522327 atctattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagcaactacaatttctttgtctccatta 47522413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 180 - 432
Target Start/End: Original strand, 47527866 - 47528115
Alignment:
Q  180 gtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaa 279  Q
    |||| ||||||||||||| |||| |||| ||||||| |||||| ||  || || | || |||| ||| |||| |||||||||||||||| |||| || ||    
T  47527866 gtctccattacagttgaaagagcaaccgagagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaa 47527965  T
Q  280 tccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctt 379  Q
    | ||||||||||||| |||||  |   |||| ||| | |||||||||| | |||| ||||  ||||||||| || ||||||| | | | | || |||||     
T  47527966 tgcgaggaagcagcagcaacatta---atttattcgtttccattacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaacaatttctc 47528062  T
Q  380 tgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagca 432  Q
    |||||||||||||| ||||| ||| ||  || |||||| |||||| |||||||    
T  47528063 tgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcagcagca 47528115  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 435
Target Start/End: Original strand, 47522145 - 47522389
Alignment:
Q  188 tacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgagga 287  Q
    ||||||||||  || || || |||||||||||||||||| || |||| |||||| | || |||| || ||||||||| ||  || |||| |||| |||||    
T  47522145 tacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgagga 47522244  T
Q  288 agcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctcca 387  Q
    | |||   || ||| | |||||| ||| ||||| ||||| | ||||| || ||||||||||||| ||||||||| ||| | | || | | || |||||||    
T  47522245 aacag---cagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctcca 47522341  T
Q  388 ttacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagca 435  Q
    || | ||||||||||  ||||| ||||||| |||| ||||||||||||    
T  47522342 ttgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagca 47522389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 47527778 - 47527911
Alignment:
Q  158 cagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttaca 257  Q
    ||||| |||||| |||| |||||||| |||| |||| ||  ||||||| | ||| ||| || ||| ||||||||||| |||||| || | |||| |||||    
T  47527778 cagtagcaagaggattttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattaca 47527877  T
Q  258 gtcgaaagagcaactgagaaaatccgaggaagca 291  Q
    || ||||||||||| |||| |||| |||||||||    
T  47527878 gttgaaagagcaaccgagagaatctgaggaagca 47527911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 451
Target Start/End: Original strand, 47522127 - 47522273
Alignment:
Q  305 caatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcg 404  Q
    ||||||||||  ||||| |||||||||||  |  | ||||||||||||||||| ||| ||  | | || ||||| |||||||||| ||||||||| || |    
T  47522127 caatttcttcgcctccactacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagag 47522226  T
Q  405 actgaaagaatccaaggaagaagcagcagcatcaatttattcttctc 451  Q
    || || ||||||  |||||  |||||||  |||||||||||| ||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctc 47522273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 445
Target Start/End: Original strand, 47522227 - 47522333
Alignment:
Q  339 accgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatca 438  Q
    |||||||||||| |||||| ||| ||| | | || ||| || |||||| ||||| |||||||||| || || ||||||| |||||| ||||||| |||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatca 47522326  T
Q  439 atttatt 445  Q
    || ||||    
T  47522327 atctatt 47522333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47527856 - 47527901
Alignment:
Q  38 caatttcttcgtctccattagagttgaaaaagctatcgagagaatc 83  Q
    |||||||||||||||||||| |||||||| ||| | ||||||||||    
T  47527856 caatttcttcgtctccattacagttgaaagagcaaccgagagaatc 47527901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 47549704 - 47549782
Alignment:
Q  253 ttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaa---caacagcaatttcttcttctccattacagt 328  Q
    |||||||| ||| ||| || |||| |||||||||||| | ||||||   ||||| |||||||||| |||||||||||||    
T  47549704 ttacagtcaaaaaagcgacagagagaatccgaggaaggaacaacaataacaacaacaatttcttcatctccattacagt 47549782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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