View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_14 (Length: 442)
Name: NF6653_low_14
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 108 - 423
Target Start/End: Complemental strand, 14396411 - 14396111
Alignment:
| Q |
108 |
ctgatttactctccaaattccannnnnnncattgtggcaagacatctatctgttagtctgaagctccatcttaatcatgttcaacaactattggatgtgt |
207 |
Q |
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| T |
14396411 |
ctgatttactctccaaattccatttttt-cattgtggcaagacatctatctgttagtctgaagctccatcttaatcatgttcaacaactattggatgtgt |
14396313 |
T |
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| Q |
208 |
ttggattttatgttaagaattcaagtttcctttcaaattggattcttatatcactttccattttgttgcttccctaagtcactttaaggattccatattg |
307 |
Q |
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| T |
14396312 |
ttggattttatgttaagaattcaagtttcctttcaaattggattcttatatcactttccattttgttgcttccctaagtcactttaaggattccatattg |
14396213 |
T |
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| Q |
308 |
tttgcacttcttgtgtttctcagatcagtatgttgggagcggtcagaatacacggcatggtcgaaaggctacaattacctcagaagacaagggaggacg- |
406 |
Q |
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| T |
14396212 |
tttgcacttcttgtgtttctgagatcagta----------------aatacacggcatggtggaaaggctacaattacctcagaagacaagggaggacgt |
14396129 |
T |
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| Q |
407 |
-tatacacctcttcttca |
423 |
Q |
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| T |
14396128 |
atatacacctcttcttca |
14396111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 15099730 - 15099658
Alignment:
| Q |
339 |
gttgggagcggtcagaatacacggcatggtcgaaaggctacaattacctcagaagacaagggaggacgtatac |
411 |
Q |
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| T |
15099730 |
gttgggagcagtcagaataagcggaatggttgaaaggctacaattatctcagcagataagggagaatgtatac |
15099658 |
T |
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