View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_15 (Length: 424)
Name: NF6653_low_15
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 6967712 - 6968107
Alignment:
| Q |
13 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
112 |
Q |
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| T |
6967712 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
6967811 |
T |
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| Q |
113 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
212 |
Q |
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| T |
6967812 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
6967911 |
T |
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| Q |
213 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
312 |
Q |
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| T |
6967912 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
6968011 |
T |
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| Q |
313 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgtttt |
408 |
Q |
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| T |
6968012 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgtttt |
6968107 |
T |
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