View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_16 (Length: 406)
Name: NF6653_low_16
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Original strand, 43984285 - 43984666
Alignment:
| Q |
9 |
agcagagaaatgaccaaaattagtaannnnnnnngcaccgagagctataataaactatgaagtatggcttaacttacaatacttgtgagtcatgctaatt |
108 |
Q |
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| T |
43984285 |
agcaaagaaatgaccaaaattagtaattttttttgcaccgagagctataataaactatgaagtatggcttaacttacaatacttgtgagtcatgctaatt |
43984384 |
T |
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| Q |
109 |
agctccaaacacttgattagcacacaagtatacacatgcatgatagtactgctacaatatatgcaacagagttttaccaaatgaactcaattgagttttc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984385 |
agctccaaacacttgattagcacacaagtatacacatgcatgatagtactgttacaatatatgcaacagagttttaccaaatgaactcaattgagttttc |
43984484 |
T |
|
| Q |
209 |
ccaatgatcagaaacttccaaccaacttagaattctatacgatacttagatgttcaatcaatgccacaccatttccacatagaattggaacataatttaa |
308 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984485 |
ccaatgatcagaaacttgcaaccaacttagaattctatacgatacttagatgttcaatcaatgccacaccatttccacatagaattggaacataatttaa |
43984584 |
T |
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| Q |
309 |
cactcctcttttaaataaattcgcttttgtataaatcctatttttaaatagtctcaacaccatcttgaacacattacacatg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43984585 |
cactcctcttttaaataaattcgcttttgtataaatcctatttttaaatagtctcaacatcatcttgaacacattacacatg |
43984666 |
T |
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