View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6653_low_17 (Length: 403)
Name: NF6653_low_17
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 48819500 - 48819105
Alignment:
| Q |
1 |
agatattgaactccataaacaaataattaattgctttttgtttcccgctacgatgctactccaaaaactgaccaaagaccttgaatattgaagatcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48819500 |
agatattgaactccataaacaaataattaattgctttttgtttcccgctacaacgctactccaaaaactgaccaaagaccttgaat---gaagatcacca |
48819404 |
T |
|
| Q |
101 |
caccaagcaaagttgtctttttctcggtatccttttatcaaataattgtcgcacaaagagagagactttgagaagcaccggtttattccatacgatgcct |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
48819403 |
caccaagcaaagttgtctttt-ctcggtatccttttatcaaataattgtcgcacaaagagagagactttgagaagcaccgatttattccatacgatgtct |
48819305 |
T |
|
| Q |
201 |
gtgaaaggagaataaacatgttgctattcagaaat-aatatattatatatt----tgacggtataaccatgttttgggtcaatttttcaaaaccaagtgt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48819304 |
gtgaaaggagaataaacatgttgctattcagaaatcaacatattatatattcctttgacggtataaccatgttttgggtcaatttttcaaaaccaagtgt |
48819205 |
T |
|
| Q |
296 |
ccgtaaccgagttctgaaaaacaaagttatcacacgaattaaagaacaaaactccattaaaagatcatccttctatacaaaaagtctcctccttcatctc |
395 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
48819204 |
ccgcaaccgagttctggaaaacaaagttatcacacaaattaaagaacaaaactccattaaaagatcctccttctatacaaaaagtatcctcctccatctc |
48819105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University