View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_21 (Length: 293)
Name: NF6653_low_21
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_21 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 28607994 - 28607729
Alignment:
| Q |
20 |
aagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttccaataaagtaaattggtgctagaaacccaccaccaaaa |
119 |
Q |
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| T |
28607994 |
aagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccactgccaataaagtaaattggtgctagaaacccaccaccaaaa |
28607895 |
T |
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| Q |
120 |
tcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatctg |
219 |
Q |
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| T |
28607894 |
tcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatcag |
28607795 |
T |
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| Q |
220 |
ttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
285 |
Q |
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| T |
28607794 |
ttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
28607729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 285
Target Start/End: Original strand, 7589668 - 7589852
Alignment:
| Q |
100 |
ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc |
199 |
Q |
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| T |
7589668 |
ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt |
7589766 |
T |
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| Q |
200 |
atgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
285 |
Q |
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| T |
7589767 |
aggtgtgccgagaatatatgttatgtgggagcgataaaaaattcccatgaccacaaagagatattggttatcattccattaatctc |
7589852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 285
Target Start/End: Original strand, 438975 - 439174
Alignment:
| Q |
86 |
aaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaat |
185 |
Q |
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| T |
438975 |
aaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaa |
439074 |
T |
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| Q |
186 |
gcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
285 |
Q |
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| T |
439075 |
gccccaacaacatcatgtgtgccaagagtatcggctatgaatgagaaaaccataaggcccataaagacaaaaactagttggttagcatcccattcatctc |
439174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 13659293 - 13659104
Alignment:
| Q |
96 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa |
195 |
Q |
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|||||||||||||| || | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
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| T |
13659293 |
ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
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| Q |
196 |
cgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
285 |
Q |
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| T |
13659193 |
tgtcttgtgttccaagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctc |
13659104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 102 - 285
Target Start/End: Complemental strand, 13651801 - 13651618
Alignment:
| Q |
102 |
agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat |
201 |
Q |
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| T |
13651801 |
agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt |
13651702 |
T |
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| Q |
202 |
gtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
285 |
Q |
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| T |
13651701 |
gtgtgccaagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctc |
13651618 |
T |
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