View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6653_low_23 (Length: 275)
Name: NF6653_low_23
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_23 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 2951777 - 2952027
Alignment:
| Q |
11 |
tatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951777 |
tatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaattt |
2951876 |
T |
|
| Q |
111 |
acagtctttcattgactaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattt |
210 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2951877 |
acagtctttcattgactaatgttcctatcactatgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattt |
2951976 |
T |
|
| Q |
211 |
tgataagggtgatattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951977 |
tgataagggtgatattagtataaggcacttcactgatctgattaggatatt |
2952027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 3004006 - 3003768
Alignment:
| Q |
23 |
ctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat |
122 |
Q |
| |
|
||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3004006 |
ctctttaaaccttggttagataatggtataagaaacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat |
3003907 |
T |
|
| Q |
123 |
tgactaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtga |
222 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3003906 |
tgactaatgttcctaccactatgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtga |
3003807 |
T |
|
| Q |
223 |
tattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3003806 |
tattagtataagtcacttcactgatctgattaggatatt |
3003768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 2927007 - 2927245
Alignment:
| Q |
23 |
ctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat |
122 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927007 |
ctctttaaaccttggttagataatggtataagacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat |
2927106 |
T |
|
| Q |
123 |
tgactaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtga |
222 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
2927107 |
tgactaatgttcctaccactatgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattgaattttgataagggtga |
2927206 |
T |
|
| Q |
223 |
tattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
2927207 |
tattattataaggcacttcactgatctgattcggatatt |
2927245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 2934446 - 2934687
Alignment:
| Q |
23 |
ctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat |
122 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934446 |
ctctttaaacctttgttagatactggtataacagacgatttaatgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcat |
2934545 |
T |
|
| Q |
123 |
tgactaatgttcccaacactatgatcca---ttcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataaggg |
219 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2934546 |
tgactaatgatcccaacactatgatacaatattcttttcttagactcactattcattattttggttattacaataaatcaaaattggattttgataaggg |
2934645 |
T |
|
| Q |
220 |
tgatattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934646 |
tgatattagtataaggcacttcactgatctgattaggatatt |
2934687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 2964391 - 2964597
Alignment:
| Q |
67 |
gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattga------------ctaatgttcccaacactatgatccattct |
154 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||| |||| |
|
|
| T |
2964391 |
gttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgttcctaacactaacatcccttct |
2964490 |
T |
|
| Q |
155 |
tttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgatta |
254 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2964491 |
tttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgatta |
2964590 |
T |
|
| Q |
255 |
ggatatt |
261 |
Q |
| |
|
||||||| |
|
|
| T |
2964591 |
ggatatt |
2964597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 59 - 261
Target Start/End: Original strand, 2973896 - 2974095
Alignment:
| Q |
59 |
gatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcccaacactatgatccattcttttc |
158 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2973896 |
gatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtatttcattgac---tgttcctaacactatgatccattcttttc |
2973992 |
T |
|
| Q |
159 |
ttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggat |
258 |
Q |
| |
|
|||||||||||||| ||| ||| | || ||| ||| ||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
2973993 |
ttaaactcactattgcttactttcaatgtttcaataaaccaaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggat |
2974092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 261
Target Start/End: Complemental strand, 2997584 - 2997378
Alignment:
| Q |
67 |
gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattga------------ctaatgttcccaacactatgatccattct |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| | ||| ||||||||||||| || | |
|
|
| T |
2997584 |
gttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtaatcctaacactatgatcccttgt |
2997485 |
T |
|
| Q |
155 |
tttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgatta |
254 |
Q |
| |
|
|||||| ||||||||||| ||| ||| || || ||| |||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997484 |
tttcttgaactcactattaattttttcttttctttcaataaatcaaacttgttttttgatgatggtgatattagtataaggcacttcactgatctgatta |
2997385 |
T |
|
| Q |
255 |
ggatatt |
261 |
Q |
| |
|
||||||| |
|
|
| T |
2997384 |
ggatatt |
2997378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 2659228 - 2658981
Alignment:
| Q |
26 |
tttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattga |
125 |
Q |
| |
|
|||||||||||||||| | ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
2659228 |
tttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaatttacaaactttcatcga |
2659129 |
T |
|
| Q |
126 |
------------ctaatgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttga |
213 |
Q |
| |
|
||| |||||| || |||| ||||| | ||||||| ||||||||||| | |||||| || || ||| |||||||| ||| |||||| |
|
|
| T |
2659128 |
gttctacaaatgctagtgttcctaagactacgatccctggttttcttgaactcactattaaatatttttattcttccaataaatcaaacttgttttttga |
2659029 |
T |
|
| Q |
214 |
taagggtgatattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2659028 |
taatggtgatattagtataatgcacttcactgatctgattaggatatt |
2658981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 2982763 - 2982951
Alignment:
| Q |
67 |
gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcccaacacta---tgatccattcttttcttaaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | || | || ||| |||||||||| || |
|
|
| T |
2982763 |
gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtcgttcat--------gttccatatacaaaagtgttcc-ttcttttcttgaa |
2982853 |
T |
|
| Q |
164 |
ctcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
|||||||| ||||| ||| | | || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2982854 |
ctcactatccattactttaaaaaattgaataaatcaaaattgtcttttgataatggtgatattagtataaggcacttcactgatctgattaggatatt |
2982951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 2937505 - 2937548
Alignment:
| Q |
218 |
ggtgatattagtataaggcacttcactgatctgattaggatatt |
261 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2937505 |
ggtgatattagtataagtcacttcactgatctgattaggatatt |
2937548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 49618306 - 49618506
Alignment:
| Q |
68 |
ttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcccaacactatgatccattcttttcttaaactca |
167 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || | | | ||| ||||| ||||||||||||||| | |
|
|
| T |
49618306 |
ttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttcattgacttatatcactacgtctaagatcccttcttttcttaaactta |
49618405 |
T |
|
| Q |
168 |
ctattcattattttggttattac-------aaaaaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatat |
260 |
Q |
| |
|
|| || |||||||| ||||| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49618406 |
ctttttattatttttattattttgattattaataaatcaaaattggattttgatgacggtgatattagtataaggcacttcactgatctgattaggatat |
49618505 |
T |
|
| Q |
261 |
t |
261 |
Q |
| |
|
| |
|
|
| T |
49618506 |
t |
49618506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 49613399 - 49613527
Alignment:
| Q |
130 |
tgttcccaacactatgatccattcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatattagt |
229 |
Q |
| |
|
||||||||| |||| |||| |||||||||| |||| | | || ||||||||| |||||||| ||||||| |||| ||||||||| || ||| ||||| |
|
|
| T |
49613399 |
tgttcccaagactaaaatcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggcgattttagt |
49613498 |
T |
|
| Q |
230 |
ataaggcacttcactgatctgattaggat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49613499 |
ataaggcacttcactgatctgattaggat |
49613527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 35451 - 35361
Alignment:
| Q |
30 |
aaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttc |
120 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35451 |
aaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttc |
35361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 35342 - 35232
Alignment:
| Q |
151 |
ttcttttcttaaactcactattcattattttggttattacaaaaaatcaaaattggattttgataagggtgatatt-agt--ataaggcacttcactgat |
247 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||| ||| |||||||||||| ||||||||| | ||| | ||| |||||||||||||||||| |
|
|
| T |
35342 |
ttcttttcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgataa---taatagtcagtgcataaggcacttcactgat |
35246 |
T |
|
| Q |
248 |
ctgattaggatatt |
261 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35245 |
ctgattaggatatt |
35232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 3339052 - 3339091
Alignment:
| Q |
59 |
gatttatggttacttgaaaatcagcttccctttttcgtta |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3339052 |
gatttattgttacttgaaaatcagcttccctttttcgtta |
3339091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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