View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_24 (Length: 254)
Name: NF6653_low_24
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_24 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 38877184 - 38877388
Alignment:
| Q |
50 |
tggatattactctgttagaagtgcgtatatatagattgtgtatgaaagtatagtagatgattctcatttgactcgtccggggaatttggctagtatttgg |
149 |
Q |
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| T |
38877184 |
tggatattactctgttagaagtgcgtatatatagattgtgtatgaaagtatagtagatgattctcatttgactcgtctggggaatttggctagtatttga |
38877283 |
T |
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| Q |
150 |
aagcataaagtccctccgaaggttaaaaatatgatatggagagtttgcaggggatgtttactgacacaggcgaggttattggataaaggggtgaactgtt |
249 |
Q |
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| T |
38877284 |
aagcataaagtccctccgaaggttaaaaatatgatatggagagtttgcatgggatgtttactgacataggcaaggttattggataaaggggtgaactgtt |
38877383 |
T |
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| Q |
250 |
cttcc |
254 |
Q |
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||||| |
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| T |
38877384 |
cttcc |
38877388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 55 - 254
Target Start/End: Original strand, 5777370 - 5777566
Alignment:
| Q |
55 |
attactctgttagaagtgcgtatatatagattgtgtatg-aaagtatagtagatgattctcatttgactcgtccggggaatttggctagtatttggaagc |
153 |
Q |
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| T |
5777370 |
attactttgttagaagtgcgtata----gtttgtgtatggaaagtctagtagataattctcatttgactcattcggggagctggtctagtatttggaagc |
5777465 |
T |
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| Q |
154 |
ataaagtccctccgaaggttaaaaatatgatatggagagtttgcaggggatgtttactgacacaggcgaggttattggataaaggggtgaactgttcttc |
253 |
Q |
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| T |
5777466 |
ttaaagtccttttgaaggttaaaaatatgatatggagagtttataggggatttttaccgacacaagcgaggttattggataaaagggtgaattgttcttc |
5777565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 28842536 - 28842399
Alignment:
| Q |
62 |
tgttagaagtgcgtatatatagattgtgtatg-aaagtatagtagatgattctcatttgactcgtccggggaatttggctagtatttggaagcataaagt |
160 |
Q |
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||||||||||||||| |||| |||||||| ||| ||||| |||| ||||||||||| || || ||| |||| | ||||||| ||||||| |||||| |
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| T |
28842536 |
tgttagaagtgcgtacatat----tgtgtatggaaaatatagcagataattctcatttgtttcatctgggtaattggtctagtatatggaagcttaaagt |
28842441 |
T |
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| Q |
161 |
ccctccgaaggttaaaaatatgatatggagagtttgcagggg |
202 |
Q |
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| T |
28842440 |
cttctcgaaagtaaaaaatatggtttggagagtttgtagggg |
28842399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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